Sequence detailsbmy_14426 (Coding sequence)

Part of scaffold_988 (SequenceType object (1))

For more information consult the page for scaffold_988 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CD74ENSTTRG00000013031 (Bottlenosed dolphin)

Gene Details

CD74 molecule, major histocompatibility complex, class II invariant chain

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000012363, Bottlenosed dolphin)

Protein Percentage 89.64%
cDNA percentage 94.13%
Ka/Ks Ratio 0.54625 (Ka = 0.0544, Ks = 0.0996)

BT.46809ENSBTAG00000015228 (Cow)

Gene Details

HLA class II histocompatibility antigen gamma chain

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000020261, Cow)

Protein Percentage 89.62%
cDNA percentage 92.17%
Ka/Ks Ratio 0.15883 (Ka = 0.0452, Ks = 0.2848)

CD74 (Minke Whale)

Gene Details

CD74 molecule, major histocompatibility complex, class II invariant chain

External Links

Gene match (Identifier: BACU013111, Minke Whale)

Protein Percentage 95.85%
cDNA percentage 97.93%
Ka/Ks Ratio 0.51807 (Ka = 0.0181, Ks = 0.0349)

Additional orthologs identified in other species via the OPTIC pipeline.

CD74 (Human)   Cd74 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 582 bp    Location:441163..450083   Strand:+
Raw sequence 
>bmy_14426
ATGGAAGACCAACGTGACCTCATCTCCAACCACGAGCAGATGCCCATGCTGGGCCAGCGCCCCAGAGCCCAGGAGAGCAAGTGCAGCCGTGGAGCCCTGTACACAGGCTTTTCCGTCCTGGTGGCTTTGCTCCTGGCCGGCCAGGCCACCACCGCCTACTTCCTGTACCGGCAGCAGGGCCGCCTGGACAAGCTGACAGTCACCTCGCAGAACCTGCAGCTGGAGAACATGCGCATGAAGCTTCCCAAACCCGCCAAGCCTCTGAGCAAGATGCGGCTCGCTACCCCGATGCTGATGCAGGCGCTGCCCATGGGAGGCCCGGAGAAGGCTGACCCCCTGAAGGTGTACCCGCAGCTGAAGGGGAGCTTCCCAGAAAACCTGAAACACCTTAAGGACACCATGGATGGCATGGACTGGAAGCTCTTTGAGAACTGGATGCATCAGTGGCTCTTGTTTGAAATGAGCAAGATCTCACTGGAGGAGAAGCCCTTTGAAGTTCCACCAAAAGACCCACTGGAGATGGAGGATCTGTCGTCTGGGCTGGGCGTGTCCAAGCCGGATCTTGGTCAGGTCATCCCGTGA

Related Sequences

bmy_14426T0 SequenceType object (3)

Length: 194 aa      View alignments
>bmy_14426T0
MEDQRDLISNHEQMPMLGQRPRAQESKCSRGALYTGFSVLVALLLAGQATTAYFLYRQQGRLDKLTVTSQNLQLENMRMKLPKPAKPLSKMRLATPMLMQALPMGGPEKADPLKVYPQLKGSFPENLKHLKDTMDGMDWKLFENWMHQWLLFEMSKISLEEKPFEVPPKDPLEMEDLSSGLGVSKPDLGQVIP*