KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:44 2014 Check: 00 .. Name: ENSP00000009530/1-296 Len: 296 Check: 9843 Weight: 1.00 Name: ENSBTAP00000020261/1-204 Len: 296 Check: 4178 Weight: 1.00 Name: ENSTTRP00000012363/1-294 Len: 296 Check: 7661 Weight: 1.00 Name: bmy_14426T0/1-193 Len: 296 Check: 8261 Weight: 1.00 Name: BACU013111/1-278 Len: 296 Check: 7087 Weight: 1.00 // 1 50 ENSP00000009530/1-296 MHRRRSRSCR EDQKPVMDDQ RDLISNNEQL PMLGRRPGAP ESKCSRGALY ENSBTAP00000020261/1-204 ---------- ------MEDQ RDLISNHEQL PMLGQRPGAQ ESKCSRGALY ENSTTRP00000012363/1-294 TGRRSSSRSG EDQRPAMEDQ RDLISNHEQV PMLGQRPGAQ ESKCSRGALY bmy_14426T0/1-193 ---------- ------MEDQ RDLISNHEQM PMLGQRPRAQ ESKCSRGALY BACU013111/1-278 ---------- ------MEDQ RDLISNHEQM PMLSQRPRAQ ESKCSRGALY 51 100 ENSP00000009530/1-296 TGFSILVTLL LAGQATTAYF LYQQQGRLDK LTVTSQNLQL ENLRMKLPKP ENSBTAP00000020261/1-204 TGFSVLVALL LAGQATTAYF LYQQQGRLDK LTVTSQNLQL ENLRMKLPKP ENSTTRP00000012363/1-294 TGFSILVALL LAGQATTAYF LYQQQGRLDK LTVTSQNLQL ENLRMKLPKS bmy_14426T0/1-193 TGFSVLVALL LAGQATTAYF LYRQQGRLDK LTVTSQNLQL ENMRMKLPKP BACU013111/1-278 TGFSVLVALL LAGQATTAYF LYQQKGRLDK LTVTSQNLQL ENMRMKLPKP 101 150 ENSP00000009530/1-296 PKPVSKMRMA TPLLMQALPM GALPQGPMQN ATKYGNMTED HVMHLLQNAD ENSBTAP00000020261/1-204 AKPMSQMRMA TPMLMRALPM AG--PEPMKN ATKYGNMTQD HVMHLLLKAD ENSTTRP00000012363/1-294 AKPLTKMRLS APMLLQDLPM EG--PEPMQN ATKYGNMTQD HVMRLLLKSD bmy_14426T0/1-193 AKPLSKMRLA TPMLMQALPM GG--PE---- ---------- -------KAD BACU013111/1-278 AKPLSKMRVA TPMLMQALPM EG--PEPMRN ATKYGNMTQD HVMQLLLKAD 151 200 ENSP00000009530/1-296 PLKVYPPLKG SFPENLRHLK NTMETIDWKV FESWMHHWLL FEMSRHSLEQ ENSBTAP00000020261/1-204 PLKVYPQLKG SLPENLKHLK DSMDGLDWKL FESWLHQWLL FEMSKNSLEE ENSTTRP00000012363/1-294 PLKVYPQLKG SFPENLKHLK DTMDGMNWKL FESWMHQWLL FEMSKISLEE bmy_14426T0/1-193 PLKVYPQLKG SFPENLKHLK DTMDGMDWKL FENWMHQWLL FEMSKISLEE BACU013111/1-278 PLKVYPQLKG SFPENLKHLK DTMDGMDWKL FENWMHQWLL FEMSKISVEE 201 250 ENSP00000009530/1-296 KPTDAPPKVL TKCQEEVSHI PAVHPGSFRP KCDENGNYLP LQCYGSIGYC ENSBTAP00000020261/1-204 KPFEGPPK-- ---------- ---------- ---------- ---------- ENSTTRP00000012363/1-294 KPFEVPPKVL TKCQKEVSRI PDIHPGMFRP KCDENGNYMP LQCYGSIGYC bmy_14426T0/1-193 KPFEVPPK-- ---------- ---------- ---------- ---------- BACU013111/1-278 KPFEVPPKVL TKCQKEVSRI PDIHPGMFRP KCDENGNYMP LQCYGSIGYC 251 300 ENSP00000009530/1-296 WCVFPNGTEV PNTRSRGHHN CSESLELEDP SSGLGVTKQD LGPVPM ENSBTAP00000020261/1-204 ---------- ---------- --DPMEMEYP SSGLGV---- ------ ENSTTRP00000012363/1-294 WCVFPNGTEV PHTRSRGHHN CSDPLEMEDL SSGLGMSKQD LGQAPS bmy_14426T0/1-193 ---------- ---------- --DPLEMEDL SSGLGVSKPD LGQVIP BACU013111/1-278 WCVFPNGTEV PHTRSRGHHN CSDPLEMEDL SSGLGVSKQD LGQVIL