Part of scaffold_988 (Scaffold)

For more information consult the page for scaffold_988 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SYNPO ENSTTRG00000012761 (Bottlenosed dolphin)

Gene Details

synaptopodin

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012107, Bottlenosed dolphin)

Protein Percentage 71.95%
cDNA percentage 73.02%
Ka/Ks Ratio 0.25665 (Ka = 0.051, Ks = 0.1988)

SYNPO ENSBTAG00000013744 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000018267, Cow)

Protein Percentage 87.69%
cDNA percentage 88.26%
Ka/Ks Ratio 0.216 (Ka = 0.0727, Ks = 0.3367)

SYNPO  (Minke Whale)

Gene Details

synaptopodin

External Links

Gene match (Identifier: BACU013108, Minke Whale)

Protein Percentage 93.83%
cDNA percentage 94.26%
Ka/Ks Ratio 0.36047 (Ka = 0.0115, Ks = 0.032)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2580 bp    Location:239590..230697   Strand:-
>bmy_14421
ATGGATCTGGCAGCGTGGGCTAGTCGATTGGCTGCCTTTCGCGGAGGCTTTGAGAAGCAAGGCCGGCTCGGCATCCAGAGGGAAGCTGGGCTGCAGGGAGGACCCAGCCGGACGCTGGGCCGGAGCACTAGCCTCACCGAGAAGGATCTAAAAGAGGCCAAGGCGAGGAGCCAGCAGATCGCAGCCCAGCTGACCACCCCTCCCAGCTCCAACTCCCGCGGCGTCCAGCTCTTCAACAGGCGCCGGCAGAGGGTGAACGAGTTCACCTTGGAGAGCCGCGGCCAGAGGGGACAGAAGCCCGGCCAGGAGTCCCTCAGGGTGCCCCCCGCCAGCCCCACAGGCCATGCCCCAGGGCTCAGCCTGAGTCCCACCTCACTCCCTGAACCAGGCCCTCCGAGAAACCCCGCCTGCCAGAGCGCTGACACAGGGGTCCCTGGTCACAGCATGGAGGGCTCCTCAGAAGAAGCCAGCTTGCTGCGGCACCTGGAGAAAGTGGCCAGTGAGGAAGAGGAGGTACCACTGGTGGTTTATTTAAAGGAGAACGCGGCCCTGCTGACGGCCAATGGGCTCCACCTGTCCCAAAACCGAGAAGCCCAGCAGACCCCTCCAACTCCACCTCCGGCGGAGGTCCACAGCCCAGCCACAGATGCCAGCCAAAACCTTCCCTCGCCTGGCGCCACACTCATCACGCCAGCTTCCAACAGCAACCACAACCCGCCAGCCACAGATGTCGATCAGAACCCACCGGCAACTGTCACCCCGCAGAGCCTGCCACTGTCCAGCGTCCAACAGAATTCTTCAGAGGCACAGCTCCCGCCAAAGGGTGCAGTGCCAGATTTCAAACCCAGCACCCCGTGTGCTGGTGGGCAACCCCAGGAGCCAGCTGCGGAGGTGAGATCCAGCACCCTACTAATTGATAAGGTATCAGCTCCACCTACCACCACCAGCACCTTCTCCAGAGAAGTTACTCCCATCTCCAGCTCCAGGCCCCCAGCCCCAGATTTCATGTCCAGCTCCCTGCTCATTGATGTCCAGCTTGGTGCCCCAGTGGTGTCCACAGAACAAGAGATGTCCGGGCGGGCAGCTGCCACCACGCCCATCAAACTGTACAGCGAGGTCCACCTCACGCTGGCCAAGCCCCCATCTGTGGTCAACAGGACGGCCAGGCCCTTTGGGATTCAGGCGCCAGGCGGCACCAGCCAGATGGAACGAAGCCCCATGGTAGAGAGACGACATCTTGGAGAGAAGGGTCCCGCTCCCCGGCCCCCCAGCGTGGCAGACAGGAGCCCTCGGCCACAGAGACACGTCATGTCCCATAGCCCCATGCTGGAGAGGAGGCCCGTGGCACAGCGAAGCCCCGCCTTGGAGAGACGCCCCTTGGGGAACTTCACCCCACCCCCAACCTATGCCGAGACCTTGTCCACGGCCCCCCTGACTTCCCGGGTTAGGTCTCCCCCCTCTTACTCTGCCCTGTACCCCAGCTCCGACCCCAAGCCTTCTCATCTAAAGGGCCAGGCAGTTCCTGCCAGCAAGACGGGCATTTTGGAGGAGTCGATAGCCCGCAGGGGCAGCCGGAAATCCATGTTCACCTTCGTGGAGAAGCCCAAGGTGACCCCGAATCCAGACCTGCTGGATCTGGTACAGACAGCAGACGAGAAGCGGAGGCAGAGGGACCAGGGGGAGATGGGCGTGGAGGAGGAGCCCTTCGCTCTGGGGGCCGAGGCCTCCAACTTCCAGCAGGAGCCCGCACCCCGGGACAGGGCCAGCCCCGCAGGTGCCGAGGAGATTGTCCCCGAGTGGGCCTCATGCCTCAAGTCACCGCGCATCCAGGCCAAGCCCAAGCCCAAACCCAACCAGAACCTCTCCGAGGCCTCTGGGAAGGGGGCTGAGCTCTACGCCCGCCGCCAGTCCCGCATGGAGAAGTACGTCATCGAGTCTTCGGGCAACGCGGAACGGGCCCGCTGCCCTTCACCCACTATGTCCCTGCCTTCGTGCTGGAAGTACCCCACCAACGCGCCTGGCGGCTTCCGAGTGGCGTCCCGAAGCCCGGCTCGGACCCCACCTGCCTCCCTCTATCATGGCTACCTGCCTGAGAACGGGGTCCTGCGCCCAGAGCCCTCCAGGCAGCCACCCTGCCAGCTGCGGCCCTCGCTCTTTGTCCTCTCACCCATCAAGGAACCTGCCAAGTCCTCGCCCACTGCCACCTCGCCTGCCAAGCCGAGCTCCCTGGACCTGGCGCCCAGCCTGCCCAAGGCGGCCCTCCCACCGTCGCCTGCCCTGCCTCGGCCCTCCCGCTCCTCCCCAGGCCTCTACACCTCCCCTGGCCAGGATGGCCTCCGGCCCACTGCCGTGAGCCCTACCTACAGCAGTGATGTCTCGCCCGTGTCTCCCTCCAGGGCGTGGTCTCCCCGAGCCAAGCAAGCCCCCAGGCCCTCCTTCTCCACCCGGAATGCCGGGATCGAGGCTCAGGTCTGTCTCTTCCACCCACCTCTGCCTTCTGGACACTGTTTCCTCTCCGCTGCTTCAGAGACCTTTGCCTCGGCCTCCACATTTTCTCTTCTCCTGGGTTCTGCTGGATGA

Related Sequences

bmy_14421T0 Protein

Length: 860 aa      View alignments
>bmy_14421T0
MDLAAWASRLAAFRGGFEKQGRLGIQREAGLQGGPSRTLGRSTSLTEKDLKEAKARSQQIAAQLTTPPSSNSRGVQLFNRRRQRVNEFTLESRGQRGQKPGQESLRVPPASPTGHAPGLSLSPTSLPEPGPPRNPACQSADTGVPGHSMEGSSEEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHLSQNREAQQTPPTPPPAEVHSPATDASQNLPSPGATLITPASNSNHNPPATDVDQNPPATVTPQSLPLSSVQQNSSEAQLPPKGAVPDFKPSTPCAGGQPQEPAAEVRSSTLLIDKVSAPPTTTSTFSREVTPISSSRPPAPDFMSSSLLIDVQLGAPVVSTEQEMSGRAAATTPIKLYSEVHLTLAKPPSVVNRTARPFGIQAPGGTSQMERSPMVERRHLGEKGPAPRPPSVADRSPRPQRHVMSHSPMLERRPVAQRSPALERRPLGNFTPPPTYAETLSTAPLTSRVRSPPSYSALYPSSDPKPSHLKGQAVPASKTGILEESIARRGSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQRDQGEMGVEEEPFALGAEASNFQQEPAPRDRASPAGAEEIVPEWASCLKSPRIQAKPKPKPNQNLSEASGKGAELYARRQSRMEKYVIESSGNAERARCPSPTMSLPSCWKYPTNAPGGFRVASRSPARTPPASLYHGYLPENGVLRPEPSRQPPCQLRPSLFVLSPIKEPAKSSPTATSPAKPSSLDLAPSLPKAALPPSPALPRPSRSSPGLYTSPGQDGLRPTAVSPTYSSDVSPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQVCLFHPPLPSGHCFLSAASETFASASTFSLLLGSAG*