Sequence detailsbmy_14421 (Coding sequence)

Part of scaffold_988 (SequenceType object (1))

For more information consult the page for scaffold_988 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SYNPOENSTTRG00000012761 (Bottlenosed dolphin)

Gene Details

synaptopodin

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000012107, Bottlenosed dolphin)

Protein Percentage 71.95%
cDNA percentage 73.02%
Ka/Ks Ratio 0.25665 (Ka = 0.051, Ks = 0.1988)

SYNPOENSBTAG00000013744 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000018267, Cow)

Protein Percentage 87.69%
cDNA percentage 88.26%
Ka/Ks Ratio 0.216 (Ka = 0.0727, Ks = 0.3367)

SYNPO (Minke Whale)

Gene Details

synaptopodin

External Links

Gene match (Identifier: BACU013108, Minke Whale)

Protein Percentage 93.83%
cDNA percentage 94.26%
Ka/Ks Ratio 0.36047 (Ka = 0.0115, Ks = 0.032)

Additional orthologs identified in other species via the OPTIC pipeline.

SYNPO (Human)   Synpo (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2580 bp    Location:239590..230697   Strand:-
Raw sequence 
>bmy_14421
ATGGATCTGGCAGCGTGGGCTAGTCGATTGGCTGCCTTTCGCGGAGGCTTTGAGAAGCAAGGCCGGCTCGGCATCCAGAGGGAAGCTGGGCTGCAGGGAGGACCCAGCCGGACGCTGGGCCGGAGCACTAGCCTCACCGAGAAGGATCTAAAAGAGGCCAAGGCGAGGAGCCAGCAGATCGCAGCCCAGCTGACCACCCCTCCCAGCTCCAACTCCCGCGGCGTCCAGCTCTTCAACAGGCGCCGGCAGAGGGTGAACGAGTTCACCTTGGAGAGCCGCGGCCAGAGGGGACAGAAGCCCGGCCAGGAGTCCCTCAGGGTGCCCCCCGCCAGCCCCACAGGCCATGCCCCAGGGCTCAGCCTGAGTCCCACCTCACTCCCTGAACCAGGCCCTCCGAGAAACCCCGCCTGCCAGAGCGCTGACACAGGGGTCCCTGGTCACAGCATGGAGGGCTCCTCAGAAGAAGCCAGCTTGCTGCGGCACCTGGAGAAAGTGGCCAGTGAGGAAGAGGAGGTACCACTGGTGGTTTATTTAAAGGAGAACGCGGCCCTGCTGACGGCCAATGGGCTCCACCTGTCCCAAAACCGAGAAGCCCAGCAGACCCCTCCAACTCCACCTCCGGCGGAGGTCCACAGCCCAGCCACAGATGCCAGCCAAAACCTTCCCTCGCCTGGCGCCACACTCATCACGCCAGCTTCCAACAGCAACCACAACCCGCCAGCCACAGATGTCGATCAGAACCCACCGGCAACTGTCACCCCGCAGAGCCTGCCACTGTCCAGCGTCCAACAGAATTCTTCAGAGGCACAGCTCCCGCCAAAGGGTGCAGTGCCAGATTTCAAACCCAGCACCCCGTGTGCTGGTGGGCAACCCCAGGAGCCAGCTGCGGAGGTGAGATCCAGCACCCTACTAATTGATAAGGTATCAGCTCCACCTACCACCACCAGCACCTTCTCCAGAGAAGTTACTCCCATCTCCAGCTCCAGGCCCCCAGCCCCAGATTTCATGTCCAGCTCCCTGCTCATTGATGTCCAGCTTGGTGCCCCAGTGGTGTCCACAGAACAAGAGATGTCCGGGCGGGCAGCTGCCACCACGCCCATCAAACTGTACAGCGAGGTCCACCTCACGCTGGCCAAGCCCCCATCTGTGGTCAACAGGACGGCCAGGCCCTTTGGGATTCAGGCGCCAGGCGGCACCAGCCAGATGGAACGAAGCCCCATGGTAGAGAGACGACATCTTGGAGAGAAGGGTCCCGCTCCCCGGCCCCCCAGCGTGGCAGACAGGAGCCCTCGGCCACAGAGACACGTCATGTCCCATAGCCCCATGCTGGAGAGGAGGCCCGTGGCACAGCGAAGCCCCGCCTTGGAGAGACGCCCCTTGGGGAACTTCACCCCACCCCCAACCTATGCCGAGACCTTGTCCACGGCCCCCCTGACTTCCCGGGTTAGGTCTCCCCCCTCTTACTCTGCCCTGTACCCCAGCTCCGACCCCAAGCCTTCTCATCTAAAGGGCCAGGCAGTTCCTGCCAGCAAGACGGGCATTTTGGAGGAGTCGATAGCCCGCAGGGGCAGCCGGAAATCCATGTTCACCTTCGTGGAGAAGCCCAAGGTGACCCCGAATCCAGACCTGCTGGATCTGGTACAGACAGCAGACGAGAAGCGGAGGCAGAGGGACCAGGGGGAGATGGGCGTGGAGGAGGAGCCCTTCGCTCTGGGGGCCGAGGCCTCCAACTTCCAGCAGGAGCCCGCACCCCGGGACAGGGCCAGCCCCGCAGGTGCCGAGGAGATTGTCCCCGAGTGGGCCTCATGCCTCAAGTCACCGCGCATCCAGGCCAAGCCCAAGCCCAAACCCAACCAGAACCTCTCCGAGGCCTCTGGGAAGGGGGCTGAGCTCTACGCCCGCCGCCAGTCCCGCATGGAGAAGTACGTCATCGAGTCTTCGGGCAACGCGGAACGGGCCCGCTGCCCTTCACCCACTATGTCCCTGCCTTCGTGCTGGAAGTACCCCACCAACGCGCCTGGCGGCTTCCGAGTGGCGTCCCGAAGCCCGGCTCGGACCCCACCTGCCTCCCTCTATCATGGCTACCTGCCTGAGAACGGGGTCCTGCGCCCAGAGCCCTCCAGGCAGCCACCCTGCCAGCTGCGGCCCTCGCTCTTTGTCCTCTCACCCATCAAGGAACCTGCCAAGTCCTCGCCCACTGCCACCTCGCCTGCCAAGCCGAGCTCCCTGGACCTGGCGCCCAGCCTGCCCAAGGCGGCCCTCCCACCGTCGCCTGCCCTGCCTCGGCCCTCCCGCTCCTCCCCAGGCCTCTACACCTCCCCTGGCCAGGATGGCCTCCGGCCCACTGCCGTGAGCCCTACCTACAGCAGTGATGTCTCGCCCGTGTCTCCCTCCAGGGCGTGGTCTCCCCGAGCCAAGCAAGCCCCCAGGCCCTCCTTCTCCACCCGGAATGCCGGGATCGAGGCTCAGGTCTGTCTCTTCCACCCACCTCTGCCTTCTGGACACTGTTTCCTCTCCGCTGCTTCAGAGACCTTTGCCTCGGCCTCCACATTTTCTCTTCTCCTGGGTTCTGCTGGATGA

Related Sequences

bmy_14421T0 SequenceType object (3)

Length: 860 aa      View alignments
>bmy_14421T0
MDLAAWASRLAAFRGGFEKQGRLGIQREAGLQGGPSRTLGRSTSLTEKDLKEAKARSQQIAAQLTTPPSSNSRGVQLFNRRRQRVNEFTLESRGQRGQKPGQESLRVPPASPTGHAPGLSLSPTSLPEPGPPRNPACQSADTGVPGHSMEGSSEEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHLSQNREAQQTPPTPPPAEVHSPATDASQNLPSPGATLITPASNSNHNPPATDVDQNPPATVTPQSLPLSSVQQNSSEAQLPPKGAVPDFKPSTPCAGGQPQEPAAEVRSSTLLIDKVSAPPTTTSTFSREVTPISSSRPPAPDFMSSSLLIDVQLGAPVVSTEQEMSGRAAATTPIKLYSEVHLTLAKPPSVVNRTARPFGIQAPGGTSQMERSPMVERRHLGEKGPAPRPPSVADRSPRPQRHVMSHSPMLERRPVAQRSPALERRPLGNFTPPPTYAETLSTAPLTSRVRSPPSYSALYPSSDPKPSHLKGQAVPASKTGILEESIARRGSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQRDQGEMGVEEEPFALGAEASNFQQEPAPRDRASPAGAEEIVPEWASCLKSPRIQAKPKPKPNQNLSEASGKGAELYARRQSRMEKYVIESSGNAERARCPSPTMSLPSCWKYPTNAPGGFRVASRSPARTPPASLYHGYLPENGVLRPEPSRQPPCQLRPSLFVLSPIKEPAKSSPTATSPAKPSSLDLAPSLPKAALPPSPALPRPSRSSPGLYTSPGQDGLRPTAVSPTYSSDVSPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQVCLFHPPLPSGHCFLSAASETFASASTFSLLLGSAG*