KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:03 2014 Check: 00 .. Name: ENSTTRP00000012107/1-840 Len: 1293 Check: 1778 Weight: 1.00 Name: ENSP00000377789/1-929 Len: 1293 Check: 3821 Weight: 1.00 Name: ENSBTAP00000018267/1-882 Len: 1293 Check: 3664 Weight: 1.00 Name: bmy_14421T0/1-859 Len: 1293 Check: 3203 Weight: 1.00 Name: BACU013108/1-1172 Len: 1293 Check: 3743 Weight: 1.00 // 1 50 ENSTTRP00000012107/1-840 MLGPHLPTPP LGPSEGKSSP CTFGLPDGSY RCLALEAEES GGEEGLQGEA ENSP00000377789/1-929 MLGPHLPPPP LAPSEGRPTP CAFQIPDGSY RCLALEAEES SGEEGLQGEV ENSBTAP00000018267/1-882 ---------- ---------- ---------- ---------- ---------- bmy_14421T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU013108/1-1172 MLGPHLPPPP LGPSEGKSSP CTFGLPDGSY RCLALEAEES GGEEGLQGEA 51 100 ENSTTRP00000012107/1-840 GLTDLEENE- VARRSEDNAC RATQGAPQLP RPRGIQSPIC SREARGGSQH ENSP00000377789/1-929 GPTDLEEDEG VSRSGDDSAC RVTQGTPQLP KALGIQPPSC SREEQGASQH ENSBTAP00000018267/1-882 ---------- ---------- ---------- ---------- ---------- bmy_14421T0/1-859 --MDLAA--- ---------- ---------- ---------- ---------- BACU013108/1-1172 GLTDLEENE- VARRSEDNAC RATQGAPQLP RARGIQSPRC SREVRGGSQH 101 150 ENSTTRP00000012107/1-840 DNRASQDWDT VKAQQVMTAG LSPSPGPRVA QKPA------ ---------- ENSP00000377789/1-929 DDRASQDWDV VKAGQMMTAS PSPGPGPRVA QKPA------ ---------- ENSBTAP00000018267/1-882 ---------- ---------- ---------- ---------- ---------- bmy_14421T0/1-859 -------W-- ---------- ---------- ---ASRLAAF RGGFEKQGRL BACU013108/1-1172 DNRASQDWDT VKAQQVMTAS LSPSPGPRVA QKPASRLAAF RGGFEKQGRL 151 200 ENSTTRP00000012107/1-840 ---------- -----LGRST SLTEKDLKEA KARSQQIAAQ LTTPPSSNSR ENSP00000377789/1-929 ---------- -----LGRST SLTEKDLKEA KARSQQIAAQ LTTPPSSNSR ENSBTAP00000018267/1-882 ---------- ---------- ---------- ---------- ---------- bmy_14421T0/1-859 GIQREAGLQG GPSRTLGRST SLTEKDLKEA KARSQQIAAQ LTTPPSSNSR BACU013108/1-1172 GIQREAGLQG GPSRTLGRST SLTEKDLKEA KARSQQIAAQ LTTPPSSNSR 201 250 ENSTTRP00000012107/1-840 GVQLFNRRRQ RVNEFTLESH GQRGQKPGQE SLRVPPASPT GHAPGLSLSP ENSP00000377789/1-929 GVQLFNRRRQ RVNEFTLESH GQRGQKPSQE SLRVLPSSLP GHAPGLSLSS ENSBTAP00000018267/1-882 ---------- ---------- ---------- ---------- ---------- bmy_14421T0/1-859 GVQLFNRRRQ RVNEFTLESR GQRGQKPGQE SLRVPPASPT GHAPGLSLSP BACU013108/1-1172 GVQLFNRRRQ RVNEFTLESR GQRGQKPGQE SLRVPPASPR GHAPGLSLSP 251 300 ENSTTRP00000012107/1-840 TSLPEPGPPR NPACQSADTG VPGHSMEGSS EEANLLRHLE KVASEEEEVP ENSP00000377789/1-929 TSLPEPGPPR HPSPQSPDRG VPGHSMEGYS EEASLLRHLE KVASEEEEVP ENSBTAP00000018267/1-882 ---------- ---------- -----MEGCS EEASLLRHLE KMASEEEEVP bmy_14421T0/1-859 TSLPEPGPPR NPACQSADTG VPGHSMEGSS EEASLLRHLE KVASEEEEVP BACU013108/1-1172 TSLPEPGPPR NPACQSADTG VPGHSMEGSS EEASLLRHLE KVASEEEEVP 301 350 ENSTTRP00000012107/1-840 LVVYLKENAA LLTANGLHLS QNREAQQTPP TPPPAEVHSP ATDASQNPPS ENSP00000377789/1-929 LVVYLKENAA LLTANGLHLS QNREAQQSSP APPPAEVHSP AADVNQNLAS ENSBTAP00000018267/1-882 LVVYLKENAA LLTANGLHLS QNREAQQSPP TPPPEEVHSP AADANQNLPS bmy_14421T0/1-859 LVVYLKENAA LLTANGLHLS QNREAQQTPP TPPPAEVHSP ATDASQNLPS BACU013108/1-1172 LVVYLKENAA LLTANGLHLS QNREAQQSPP TPPPAEVHSP ATDASQDLPS 351 400 ENSTTRP00000012107/1-840 PGATLXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000377789/1-929 PSATLTTPTS NSSHNPPATD VNQNPPATVV PQSLPLSSIQ QNSSEAQLPS ENSBTAP00000018267/1-882 TGTTLVTPAS NGNHSLPATD VNQNLSAAIT PQSLPLSSVQ QNSSEVQLPP bmy_14421T0/1-859 PGATLITPAS NSNHNPPATD VDQNPPATVT PQSLPLSSVQ QNSSEAQLPP BACU013108/1-1172 PGATVITPPS NSSHNPPATD VDQNPPATVT PQSLPLSSVQ QNSSEAQLPP 401 450 ENSTTRP00000012107/1-840 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000377789/1-929 NGTGPASKPS TLCADGQPQA PAEEVRCSTL LIDKVSTPAT TTSTFSREAT ENSBTAP00000018267/1-882 NDVVPDFKPS TQCAGGQPQE PAVEVRSSTL LIDKVSAPPT ATSTFSREVT bmy_14421T0/1-859 KGAVPDFKPS TPCAGGQPQE PAAEVRSSTL LIDKVSAPPT TTSTFSREVT BACU013108/1-1172 KGAVPDFKPS TPCAAGQPQE PAAEVRSSTL LIDKVSAPPT TASTFSREVT 451 500 ENSTTRP00000012107/1-840 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000377789/1-929 LIPSSRPPAS DFMSSSLLID IQPNTLVVSA DQEMSGRAAA TTPTKVYSEV ENSBTAP00000018267/1-882 PISSSRPLGP DFMSSSLLID VQLGAPVVST EQEMSGRTTA TTPTKLYSEV bmy_14421T0/1-859 PISSSRPPAP DFMSSSLLID VQLGAPVVST EQEMSGRAAA TTPIKLYSEV BACU013108/1-1172 PISSSRPPAP DFMSSSLLID VQLGAPVVST EQEMSGRAAA TTPIKLYSEV 501 550 ENSTTRP00000012107/1-840 XXXXXXXXXX XXRTARPFGI QAPGGTSQME RSPMVERRHL GEKGPAPRPP ENSP00000377789/1-929 HFTLAKPPSV VNRTARPFGI QAPGGTSQME RSPMLERRHF GEKAPAPQPP ENSBTAP00000018267/1-882 HLTLAKPPSV VNRTARPFGI QAPGSTGQME RSPMVERRHR GEKTPVPQPP bmy_14421T0/1-859 HLTLAKPPSV VNRTARPFGI QAPGGTSQME RSPMVERRHL GEKGPAPRPP BACU013108/1-1172 HLTLAKPPSV VNRTARPFGI QAPGGTSQME RSPMVERRHL GEKGPAPRPP 551 600 ENSTTRP00000012107/1-840 SVADRSPRPQ RHIMSHSPML ERRPVAQRSP ALERRPLGNF TPPPTYAETL ENSP00000377789/1-929 SLPDRSPRPQ RHIMSRSPMV ERRMMGQRSP ASERRPLGNF TAPPTYTETL ENSBTAP00000018267/1-882 SVADRSPRPQ RHVISHSPML ERRPVAQRSP ALERRPLGNF TPPPTYAETL bmy_14421T0/1-859 SVADRSPRPQ RHVMSHSPML ERRPVAQRSP ALERRPLGNF TPPPTYAETL BACU013108/1-1172 SVADRSPRPQ RHVMSHSPML ERRPVAQRSP ALERRPLGNF TPPPTYAETL 601 650 ENSTTRP00000012107/1-840 STAPLTSRVR SPPSYSALYP SSDPKPSHLK GQAVPASKTG ILEESMARRG ENSP00000377789/1-929 STAPLASWVR SPPSYSVLYP SSDPKSSHLK GQAVPASKTG ILEESMARRG ENSBTAP00000018267/1-882 STAPLTSGVR SPPSYSALYP SSDSKPSHLK GQAVPASKTG ILEESMARRG bmy_14421T0/1-859 STAPLTSRVR SPPSYSALYP SSDPKPSHLK GQAVPASKTG ILEESIARRG BACU013108/1-1172 STAPLTSRVR SPPSYSALYP SSDPKPSHLK GQAVPASKTG ILEESIARRG 651 700 ENSTTRP00000012107/1-840 SRKSMFTFVE KPKVTPNPDL LDLVQTADEK RRQRDQGEMG VEEEPFALGA ENSP00000377789/1-929 SRKSMFTFVE KPKVTPNPDL LDLVQTADEK RRQRDQGEVG VEEEPFALGA ENSBTAP00000018267/1-882 SRKSMFTFVE KPKVTPNPDL LDLVQTADEK RRQRDQGEAG LEEEPFALGA bmy_14421T0/1-859 SRKSMFTFVE KPKVTPNPDL LDLVQTADEK RRQRDQGEMG VEEEPFALGA BACU013108/1-1172 SRKSMFTFVE KPKVTPNPDL LDLVQTADEK RRQRDQGEMG VEEEPFALGA 701 750 ENSTTRP00000012107/1-840 EASNFQQEPA PRDRASPAGA EEIVPEWASC LKSPRIQAKP KPKPNQNLSE ENSP00000377789/1-929 EASNFQQEPA PRDRASPAAA EEVVPEWASC LKSPRIQAKP KPKPNQNLSE ENSBTAP00000018267/1-882 EASNFQQEPA PRDRASPADA EETIPEWASC LKSPRIQAKP KPKPNQNLSE bmy_14421T0/1-859 EASNFQQEPA PRDRASPAGA EEIVPEWASC LKSPRIQAKP KPKPNQNLSE BACU013108/1-1172 EASNFQQEPA PRDRASPAGA EEIVPEWASC LKSPRIQAKP KPKPNQNLSE 751 800 ENSTTRP00000012107/1-840 ASGKGAELYA RRQSRMEKYV IESSGHA-ER ARCPSPTMSL PSCWKYPTHA ENSP00000377789/1-929 ASGKGAELYA RRQSRMEKYV IESSSHTPEL ARCPSPTMSL PSSWKYPTNA ENSBTAP00000018267/1-882 ASGKGAELYA RRQSRMEKYV IESSGHA-EL ARCPSPTMSL PSSWKYSTNT bmy_14421T0/1-859 ASGKGAELYA RRQSRMEKYV IESSGNA-ER ARCPSPTMSL PSCWKYPTNA BACU013108/1-1172 ASGKGAELYA RRQSRMEKYV IESSGHA-ER ARCPSPTMSL PSCWKYPTNA 801 850 ENSTTRP00000012107/1-840 PGG-FRVAS- SPARTPPASL YHGYLTENGV LHTEPLQPP- --MRPSFFVL ENSP00000377789/1-929 PGA-FRVASR SPARTPPASL YHGYLPENGV LRPEPTKQPP YQLRPSLFVL ENSBTAP00000018267/1-882 PGGTFRVASR SPARTPPASL FHGYLPENGV LRPEPTKQPP YQLRPSLFVL bmy_14421T0/1-859 PGG-FRVASR SPARTPPASL YHGYLPENGV LRPEPSRQPP CQLRPSLFVL BACU013108/1-1172 PGG-FRVASR SPARTPPASL YHGYLPENGV LRPEPSRQPP CQLRPSLFVL 851 900 ENSTTRP00000012107/1-840 SPIKDAAKSS LSSS-SAISI ILHRAPSLP- ---------- ---------- ENSP00000377789/1-929 SPIKEPAKVS PRAASPAKPS SLDLVPNLPK GALPPSPALP RPSRSSPGLY ENSBTAP00000018267/1-882 SPIKEPAKPS PRAASPAKPS SLDLVPSLPK AALPPSPALP RPSRS----Y bmy_14421T0/1-859 SPIKEPAKSS PTATSPAKPS SLDLAPSLPK AALPPSPALP RPSRSSPGLY BACU013108/1-1172 SPIKEPAKSS PTAAPPAKPS SLDLAPSLPK AALPPSPALP RPSRSSPGLY 901 950 ENSTTRP00000012107/1-840 ---------- ---------- ---------- ---------- ---------- ENSP00000377789/1-929 TSPGQDSLQP TAVSPPYGGD ISPVSPSRAW SPRAKQAPRP SFSTRNAGIE ENSBTAP00000018267/1-882 TTTGQDGLQP TAVSPTYSSD ISPVSPSRAW SPRAKQAPRP SFSTRNAGIE bmy_14421T0/1-859 TSPGQDGLRP TAVSPTYSSD VSPVSPSRAW SPRAKQAPRP SFSTRNAGIE BACU013108/1-1172 TSPGQDGLRP TAVSPTYSSD VSPVSPSRAW SPRAKQAPRP SFSTRNAGIE 951 1000 ENSTTRP00000012107/1-840 ---------- ---------- ---------- ---------- ---------- ENSP00000377789/1-929 AQ-------- --VWKPSFCF K--------- ---------- ---------- ENSBTAP00000018267/1-882 AQDRRESLPT SPPWTPGASR PPSSLDGWVS PGPWEPGRGS SMSS------ bmy_14421T0/1-859 AQ----VCLF HPPLPSGHCF LSAASETF-- ---------- ---------- BACU013108/1-1172 AQDRRENLPT SPPWTPGASR PPSSLDGWVS PGPWEPGRGS SLSSXXXXXX 1001 1050 ENSTTRP00000012107/1-840 ---------- ---------- ---------- ---------- ---------- ENSP00000377789/1-929 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018267/1-882 ---------- ---------- ---------- ---------- ---------- bmy_14421T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU013108/1-1172 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1051 1100 ENSTTRP00000012107/1-840 ---------- ---------- ---------- ---------- ---------- ENSP00000377789/1-929 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018267/1-882 ---------- ---------- ---------- ---------- ---------- bmy_14421T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU013108/1-1172 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1101 1150 ENSTTRP00000012107/1-840 ---------- ---------- ---------- ---------- ---------- ENSP00000377789/1-929 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018267/1-882 ---------- ---------- -----PPPLP PPPPMSPSWS ERSVSPLRSE bmy_14421T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU013108/1-1172 XXXXXXXXXX XXXXXXXXXX XXXXXXGARC PRRPGPSPTA ARPRTPMC-- 1151 1200 ENSTTRP00000012107/1-840 ---------- ---------- ---------- ---------- ---------- ENSP00000377789/1-929 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018267/1-882 TEVRPPSRQL QALLARNIIN AARRKSASPR PAGAESLRPF SPPRAPPPPP bmy_14421T0/1-859 ---------- ---------- ---------- ---------- ---------- BACU013108/1-1172 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000012107/1-840 ---------- ---------- ---------- ---------- ---------- ENSP00000377789/1-929 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018267/1-882 PPPPRMRSPQ PSRPGPAAAP GATFAPIPRS PLPAPPRPFP YRRSPTDSDV bmy_14421T0/1-859 ---------- ---------- ---------- ---------- ----ASASTF BACU013108/1-1172 ---------- ---------- ---------- --PSTPRTLG LSRPASSATT 1251 1300 ENSTTRP00000012107/1-840 ---------- ---------- ---------- ---------- --- ENSP00000377789/1-929 ---------- ---------- ---------- ---------- --- ENSBTAP00000018267/1-882 SLDSEDSGAK SPGILGYNIC PRGWNGSLRL KRGNLPTEAS CTT bmy_14421T0/1-859 SLLLGSAG-- ---------- ---------- ---------- --- BACU013108/1-1172 SVPAGGTAA- ---------- ---------- ---------- ---