Part of scaffold_961 (Scaffold)

For more information consult the page for scaffold_961 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TAPBP ENSTTRG00000004309 (Bottlenosed dolphin)

Gene Details

TAP binding protein (tapasin)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004053, Bottlenosed dolphin)

Protein Percentage 92.86%
cDNA percentage 94.7%
Ka/Ks Ratio 0.4645 (Ka = 0.0428, Ks = 0.0922)

TAPBP ENSBTAG00000016828 (Cow)

Gene Details

tapasin precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000022386, Cow)

Protein Percentage 84.04%
cDNA percentage 88.27%
Ka/Ks Ratio 0.41958 (Ka = 0.0971, Ks = 0.2313)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 927 bp    Location:291004..282796   Strand:-
>bmy_14331
ATGAAGCCCCTGTCCCTGCTCCTCGCTGTGGCTCTGGGCTCGGCGACCGCCGTCTTGGCGGGACCCGCAGTGATAGAGTGCTGGTTCGTGGAGGATGAGGGCGGCGGCCGGTTGTCCAAGAAACCCGCTGCACTGCTGCTGCGCCAGGGCCCGGAGAGCCCACCTCCCCGGCCGGACCTCGACCCAGAGCGCTACCTCAAAGTGCATGCTGTGCTGACTGTCCTCACTCACACCCCCACCCCTCGCATCCGAATGGGACAAGATGCCCTGCTGGACTTGAGCTTTGCCTACACGCCCCCCACCCCCAAGGCTGCTACCTCTCTGGCCCCAGGTCCCCCTCCCTTTGGGCTGGAATGGCGACGCCAGCACCTGGTGCAGCCCTTCCAGGAGGGCACCTATCTGGCTACTGTACACCTGCCATACCTGCAAGGGCAGACCACCCTGGAGCTTGCTGTACAGAAGCCCCCCAAGGTGGCCCTGACACCAGCACCTCTTATATGGGCTGCCCCCAGGGAGGCACCCCCGGAGCTGCTCTGCCTCGTGTCCCACTTCTACCCCTCCGAGGGCCTGGAGGTGGAGTGGGAGCTCTGGGATGGCCCAGAGGGTCGCTTTCAGAAGGCCGAGGGGCAGAGGTGGCTCTCGGCCCTGAGCCATCACTCAGATGGCTCTCTGAGCCTCTCTGCACACCTGCAGCCACCCCCGGTCACCACTGGGCAGCACGGGGCACGCTATGCCTGTCGTGTCCACCACCCCAGCCTGCCCGCCTCGGGGCGCAGCGCCAAGGTCACCCTGCAGGTAGCTGGTCTCTCTGGGCCCTCTCTGGAGGATGGCGTAGGCCTCTTCCTGTCTGCCTTTCTCCTCCTTGGGCTCATCAACGTGCTGGGCTGGGCCGGTGAGTGTAAGCCCCACCCAGACTGGGACCCTTGA

Related Sequences

bmy_14331T0 Protein

Length: 309 aa      View alignments
>bmy_14331T0
MKPLSLLLAVALGSATAVLAGPAVIECWFVEDEGGGRLSKKPAALLLRQGPESPPPRPDLDPERYLKVHAVLTVLTHTPTPRIRMGQDALLDLSFAYTPPTPKAATSLAPGPPPFGLEWRRQHLVQPFQEGTYLATVHLPYLQGQTTLELAVQKPPKVALTPAPLIWAAPREAPPELLCLVSHFYPSEGLEVEWELWDGPEGRFQKAEGQRWLSALSHHSDGSLSLSAHLQPPPVTTGQHGARYACRVHHPSLPASGRSAKVTLQVAGLSGPSLEDGVGLFLSAFLLLGLINVLGWAGECKPHPDWDP*