Part of scaffold_961 (Scaffold)

For more information consult the page for scaffold_961 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VPS52 ENSTTRG00000004298 (Bottlenosed dolphin)

Gene Details

vacuolar protein sorting 52 homolog (S. cerevisiae)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004044, Bottlenosed dolphin)

Protein Percentage 95.32%
cDNA percentage 95.27%
Ka/Ks Ratio 0.37934 (Ka = 0.0354, Ks = 0.0933)

VPS52 ENSBTAG00000002643 (Cow)

Gene Details

vacuolar protein sorting-associated protein 52 homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000003427, Cow)

Protein Percentage 94.34%
cDNA percentage 91.09%
Ka/Ks Ratio 0.13404 (Ka = 0.0398, Ks = 0.297)

VPS52  (Minke Whale)

Gene Details

vacuolar protein sorting 52 homolog (S. cerevisiae)

External Links

Gene match (Identifier: BACU012228, Minke Whale)

Protein Percentage 96.04%
cDNA percentage 96.28%
Ka/Ks Ratio 0.5547 (Ka = 0.0319, Ks = 0.0575)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2163 bp    Location:255427..234705   Strand:-
>bmy_14325
ATGGCCGCCGCTGCGACCATGGCTGCAGCCGCCCGGGAGCTGGTGTTGCGGGCCGGAGCCTCAGATATGGAGGAGGAGGAGGGCCCGCTGGAGGGTGGTCCGGGTCTTCAGGAGCCATTGCAGCTTGGAGAGTTGGACATCACCTCTGATGAATTCATCCTGGATGAAGTGGATGTTCACATTCAGGCGAATCTGGAGGATGAGTTAGTAAAGGAAGCTCTTAAAACGGGTGTGGATCTCCGTCACTATTCAAAGCAGGTTGAGCTGGAGCTACAGCAGATTGAGCAGAAATCCATTCGGGATTATATCCAAGAGAGTGAGAACATAGCATCTCTGCACAACCAAATCACAGCCTGTGATGCTGTCCTTGAGCGCATGGAGCAGATGTTGGGAGCTTTTCAGAGTGATCTCAGCTCCATCAGCTCTGAGATCCGGACACTGCAGGAACAGTCAGGAGCCATGAACATTCGGCTTCGAAACCGCCAGGCTGTCCGGGGGAAACTCGGGGAGCTTGTCGATGGTCTGGTGGTGCCCTCTGCTCTGGTCACGGCAATTCTGGAGGCACCAGTCACAGAGCCCCGGTTCCTGGAGCAGCTGCAGGAGCTGGATGCCAAGGCAGCTGCAGTCCGAGAGCAGGAGGCTAGGGGCACAGCGGCCTGCGCAGACGTCCGAGGCGTGCTCGACCGGCTCCGGATCAAGGCAGTGACGAAGATCCGAGAGTTCATCCTTCAGAAGATCTATTCCTTCAGAAAACCAATGACCAACTATCAGATCCCCCAGACGGCCCTGYTGAAGTTTTTCTATCAGTTCCTGCTGGGCAACGAACGGGCCACCGCAAAGGAGATCAGGGACGAGTACGTGGAGACGCTGAGCAAGATCTACCTGTCCTACTACCGCTCTTACCTGGGGCGGCTCATGAAGGTGCAGGTGAGGCCACGGAGGGAGAGGCAGTCCTGGGCCCCTTGGCTGGGGGGAGGGGCAGCTACGGGGCAATGGGGGACATATGAGGAAGTCGCTGAGAAGGATGATCTAATGGGCCCATCCCTCCGCAGCAGGAACACCATCTTCACCCTGGGGACCCGGGGCTCTGTCATCTCCCCCACTGAACTGGAAGCCCCCATCCTTGTGCCCCACACGGCCCAGCGGGGAGAACAGAGGTATCCTTTCGAGGCCCTCTTCCGCAGCCAGCAYTACGCCCTCCTCGACAACTCCTGCCGTGAATACCTTTTCATCTGTGAATTCTTTGTGGTGTCTGGCTCGGCTGCACAGGACCTCTTCCACGCCGTCATGGGCCGCACGCTCAGCATGACCCTGAAACACCTGGAGTCTTACCTCACTGACTGCTACGATGCCATTGCTGTTTTTCTCTGTATCCATATTGTCCTCCGATTCCGCAACATTGCAGCCAAGAGGGATGTTCCTGCCCTGGACAGGTACTGGGAACAAGTGCTTGCCTTGCTGTGGCCACGGTTTGAACTGATCCTGGAGATGAACGTCCAGAGTGTCCGCAGCACTGACCCTCAGCGCCTCGGGGGGCTGGACACTCGGCCTCACTACATCACACGCCGCTATGCAGAGTTCTCCTCTGCTCTTGTCAGCATCAATCAGACGATTCCCAATGAACGGACGATGCAGCTGCTGGGCCAGCTACAGGTGGAGGTGGAGAATTTTGTCCTCCGAGTGGCAGCCGAGTTCTCCTCAAGGAAGGAGCAGCTTGTGTTTCTGATCAACAACTATGACATGATGCTGGGGGAGGGTAATCCTTGGAGATTTCCCCTACTTCTTGAATTCATTGAAGAATTGCTGTCTCCCCCCTTTGGGGGTCTGGTGGCATTTGTGAAGGAAGCTGAGGCTTTGATTGAGCGTGGACAAGCTGAACGACTTCGAGGGGAAGAAGCCCGGGTTACTCAGCTAATCCGTGGCTTTGGTAGTTCCTGGAAATCATCGGTGGAGTCTCTGAGTCAGGATGTGATGCGGAGTTTCACCAACTTCAAAAATGGAACCAGTATCATCCAGGGAGCGCTGACCCAGCTGATCCAGCTCTATCATCGCTTCCACCGGGTGCTGTCTCAGCCGCAGCTCCGAGCCCTGCCTGCCCGGGCCGAGCTCATCAACATCCACCACCTCATGGTGGAGCTCAAGAAGCACAAGCCCAACTTCTGA

Related Sequences

bmy_14325T0 Protein

Length: 721 aa      View alignments
>bmy_14325T0
MAAAATMAAAARELVLRAGASDMEEEEGPLEGGPGLQEPLQLGELDITSDEFILDEVDVHIQANLEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDYIQESENIASLHNQITACDAVLERMEQMLGAFQSDLSSISSEIRTLQEQSGAMNIRLRNRQAVRGKLGELVDGLVVPSALVTAILEAPVTEPRFLEQLQELDAKAAAVREQEARGTAACADVRGVLDRLRIKAVTKIREFILQKIYSFRKPMTNYQIPQTALLKFFYQFLLGNERATAKEIRDEYVETLSKIYLSYYRSYLGRLMKVQVRPRRERQSWAPWLGGGAATGQWGTYEEVAEKDDLMGPSLRSRNTIFTLGTRGSVISPTELEAPILVPHTAQRGEQRYPFEALFRSQHYALLDNSCREYLFICEFFVVSGSAAQDLFHAVMGRTLSMTLKHLESYLTDCYDAIAVFLCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRFELILEMNVQSVRSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTMQLLGQLQVEVENFVLRVAAEFSSRKEQLVFLINNYDMMLGEGNPWRFPLLLEFIEELLSPPFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKSSVESLSQDVMRSFTNFKNGTSIIQGALTQLIQLYHRFHRVLSQPQLRALPARAELINIHHLMVELKKHKPNF*