Part of scaffold_961 (Scaffold)

For more information consult the page for scaffold_961 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RXRB ENSTTRG00000004291 (Bottlenosed dolphin)

Gene Details

retinoid X receptor, beta

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004036, Bottlenosed dolphin)

Protein Percentage 100.0%
cDNA percentage 99.27%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0288)

RXRB ENSBTAG00000000602 (Cow)

Gene Details

retinoic acid receptor RXR-beta

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000000860, Cow)

Protein Percentage 99.06%
cDNA percentage 95.86%
Ka/Ks Ratio 0.02821 (Ka = 0.0044, Ks = 0.1559)

RXRB  (Minke Whale)

Gene Details

retinoid X receptor, beta

External Links

Gene match (Identifier: BACU018870, Minke Whale)

Protein Percentage 99.78%
cDNA percentage 99.34%
Ka/Ks Ratio 0.10434 (Ka = 0.002, Ks = 0.0193)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1614 bp    Location:204297..198605   Strand:-
>bmy_14321
ATGTCTTGGGCTGCTCGCCCGCCCTTCCTCCCCCAGCGGCATGCCGCAGGGCAGTGTGGGCCGGTGGGGGTGCGAAAAGAAATGCATTGTGGGGTCGCGTCCCGGTGGCGGCGGCGACGGCCCTGGCTGGATCCCGCAGCAGCAGCGGCGGCGGCGGTGGCAGCCGGAGAACAACAAACCCCGGAGCCGGAGCCGGGGGAGGCTGGACGGGACGGGATGGGCGACAGCGGGCGGGACTCCCGAAGCCCAGACAGTTCCTCTCCAAATCCCCTTCCCCAGGGGGCCGCTCCCCCTTCTCCTCCGGGGCCACCCTTACCCCCTTCAGCAGCTGCATCCCTTGGAGGCTCTGGGGCTCCACCCCCCCCCCCGATGCCACCCCCGCCACTGGGCTCCCCCTTCCCGGTCATCAGCTCTTCCATGGGGTCCCCTGGTCTGCCCCCTCCAGCTCCCCCAGGATTCTCCGGGCCTGTCAGCAGTCCCCAGATTAACTCAACAGTGTCGCTCCCTGGGGGTGGGTCTGGCCCCCCTGAAGATGTGAAGCCACCAGTCTTAGGGGTCCGGGGCCTGCACTGTCCACCCCCTCCAGGTGGCCCTGGGGCTGGCAAACGTCTATGTGCAATCTGCGGGGACCGAAGCTCAGGCAAACACTACGGGGTTTACAGCTGTGAGGGCTGCAAAGGCTTCTTCAAGCGCACCATCCGTAAGGACCTGACCTACTCGTGCCGGGACAACAAGGACTGCACGGTGGACAAGCGCCAGCGGAACCGCTGTCAGTACTGCCGCTATCAGAAGTGCCTGGCCACCGGCATGAAGAGGGAGGCGGTACAGGAGGAGCGTCAGCGGGGGAAGGACAAGGATGGGGATGGGGAGGGGGCTGGGGGAGCCCCCGAGGAGATGCCCGTGGACAGGATCCTGGAGGCAGAGCTTGCTGTGGAGCAGAAGAGTGACCAGGGCGTTGAGGGTCCCGGGGGAACCGCGGGTAGCGGCAGCAGCCCAAATGACCCTGTGACCAACATCTGCCAGGCAGCTGACAAACAGCTCTTCACACTTGTTGAGTGGGCAAAGAGGATCCCACACTTTTCCTCCTTGCCTCTGGATGACCAGGTCATACTGCTACGGGCAGGCTGGAACGAGCTCCTCATTGCCTCCTTCTCTCACCGATCCATCGATGTCCGAGACGGCATCCTCCTCGCCACAGGTCTTCACGTGCACCGCAACTCAGCCCATTCCGCAGGCGTGGGAGCCATCTTTGATCGGTCCCTCTCCAGGGTGCTGACAGAGCTAGTGTCCAAAATGCGTGACATGAGGATGGACAAGACAGAACTTGGCTGCCTGAGGGCAATCATTCTGTTCAATCCAGATGCCAAGGGCCTCTCCAACCCCAGCGAGGTAGAGGTCCTGCGGGAGAAAGTGTACGCGTCCCTGGAGACCTATTGCAAACAGAAGTACCCTGAGCAGCAGGGCCGGTTTGCCAAGCTGCTCTTGCGTCTTCCTGCTCTCAGGTCCATAGGCCTTAAGTGTCTAGAGCATCTGTTTTTCTTCAAGCTCATTGGCGACACCCCCATCGACACCTTCCTCATGGAGATGCTTGAGGCTCCCCACCAGCTGGCCTGA

Related Sequences

bmy_14321T0 Protein

Length: 538 aa      View alignments
>bmy_14321T0
MSWAARPPFLPQRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAVAAGEQQTPEPEPGEAGRDGMGDSGRDSRSPDSSSPNPLPQGAAPPSPPGPPLPPSAAASLGGSGAPPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEMPVDRILEAELAVEQKSDQGVEGPGGTAGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA*