Part of scaffold_961 (Scaffold)

For more information consult the page for scaffold_961 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TAP1 ENSTTRG00000004264 (Bottlenosed dolphin)

Gene Details

transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004016, Bottlenosed dolphin)

Protein Percentage 91.48%
cDNA percentage 95.23%
Ka/Ks Ratio 0.89569 (Ka = 0.0487, Ks = 0.0543)

TAP1 ENSBTAG00000008953 (Cow)

Gene Details

antigen peptide transporter 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000045934, Cow)

Protein Percentage 84.46%
cDNA percentage 88.87%
Ka/Ks Ratio 0.37932 (Ka = 0.089, Ks = 0.2347)

TAP1  (Minke Whale)

Gene Details

transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)

External Links

Gene match (Identifier: BACU012236, Minke Whale)

Protein Percentage 98.51%
cDNA percentage 98.96%
Ka/Ks Ratio 0.44713 (Ka = 0.0078, Ks = 0.0175)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2331 bp    Location:28854..20911   Strand:-
>bmy_14314
CGGTCCGGGCGCCCGCCCTGCTACGACTCCGACAGCTTCCAGAGACTCCGTCCTGGCGAGGACGGCGAGAGTCCCAGGACCCGGGCCGGCCTCGAACCGCGCGCGCCCATGGCCTGCTCGGAGTCCCCCGCTCCCTGCGGGTGTCTCCGCCTCTCCCGAGCCTCCCTCGCGTGCCTGGGGACAGCGCTGCTGCTCCTCGCCGACTGGATGCTGCTCCGGCTGGCGCTGCCCCGAATAGCCTCCCTGCTGGTACCCCCTGCGCTGCCGCTGCTCCGGGTCTGGGTGGCGGGCCTGAGCCGCTGGGCGGTGCTGTGGCTGGGAGCCCGAGGCGTCCTCGGGGCAGCGCTGGGCTTCCGGAGAGAAAGCGCAGGAGTCCGGGGATGGCTGGCTGCTTTGGAGCCGCTGGCGGCGGTGCTGGGCTTGGCCCTGCCGGGACTTGCCTCGTTCCGAGAGCTGGGCTCGTGGGGAGCCCCCAGGGACGCTGACAGCACCCGGCCACTGCACTGGGGAAGTCGCCTGGACGCCTTTGCGCTCAGCTACACGGCGGCACTGGCCGCGGCCGCCCTGTGGCATAAGATCAGGAGCCTTTGGGTGCAAGGAGCTCACGGCGCTTCTGGAGTGGCGGTGAGCCGGCTTCTAGGCTTCCTGGGCCCAGAGAAAGAACGCCTCCCGCTCATTCTGACCCTGTTGGTACTCTCCTGTCTTGGGGAGATGGCTGTTCCATTCTTCACGGGCCGTTTCACGGACTGGATTCTACATGACAGGACAGGCGCTGCCTTCACTCGAAACATAACTCTCATGTCTGTCCTCACCATAGCCAGCGCAGTGCTGGAGTTCATGGCTGATGGAATCTACAACAGCACCATGGGCCGCGTGCGCAGCCACCTGCAGGGAGAGGTGTTTCGGGCTGTCCTGCGCCAGGAAACAGAGTTTTTTCAAAAGAACCAAACAGGTGCCATCACATCTCGGGTCACAGAGGACACGTCCACCATGAGTGAGTCTCTGAGTTCGCAGCTGAGCCTCTTGCTGTGGTACCTTGGGCGTGGACTGTGTCTCTTGGGGCTCATGCTCTGGGGGTCCCCGTCCCTCACCATGGTCACCCTGCTCGCCCTGCCACTACTTTTCCTTCTGCCTAAGAAGCTGGGAAAATGGCACAAGGTGCTGGCAGCACAGGTGCAGGAATCTCTGGCAGAATCCAGCCAGGTGGCCATTGAGGTGCTGTCAGCTATGCCTACAGTCCGGAGCTTTGCCAACGAAGAGGGTGAGGCCCAGAAGTTCAGGCAAAAGCTGCATGAAATGAAGACACTCAACCAGAAGGAGGCCCTGGCCTACGCGGTCAACCTCTGGACCACCAGTATCTCAGGATTGCTGCTGAAGGTGGGAATCCTGTATTTCGGTGGGCAGCTGGTGACAAGTGGGTCTGTAAGCAGTGGGCACCTGGTCACCTTTGTTCTTTACCAGATCCAGTTCACCACAGCTGTAGAGGTACTGCTGTTCGTCTATCCCAGGGTACAGAAGGCTGTGGGCTCTTCAGAGAAAATATTTGAATACCTGGACCGGATCCCTCGCTGCCCAGCCAGTGGTGTGTTCACTTCCTTAAAGTTGCAGGGCCTCGTCCAGTTCCAGGGTGTCTCCTTCGCCTACCCAAACCGTCTAGATGTCCCAGTGCTGCAGGTGACGGCGCTGGTGGGGCCCAATGGGTCTGGGAAGAGCACAGTGGCTGCCCTGCTGCAGAATCTGTACCAGCCCACCGAGGGGCAGGTACTCCTGGACGGGGAGCCCCTTCCCAAATATGAGCACCGCTACCTGCACAGACAGGTGGCTGCTGTGGGACAAGAGCCACAGCTATTTGGAAGAAGCTTTAAAGAAAATATTGCCTATGGCCTGGTCCAGAAGCCAACCATGGAGGACATCACAGCTGCTGCAGTGGAGTCTGGAGCCCACGGTTTCATCTCTGTACTCCCTCAAGGCTACGACACAGAGGTAGGTGAGGCTGGGGGCCAGCTGTCAGGGGGTCAGCGACAGACAGTGGCCTTGGCTCGAGCCTTGATCCGGAAACCATGTGTACTCATCCTGGATGATGCTACCAGTGCCCTGGATGCAAACAGCCAGTCCCGGGTGGAGCAGCTCCTGTATGAAAGCCCTGAGCGGTGCTCTCGGTCTGTGCTTCTCATCACCCAGCGCCTCAGCTCGTTGAAGCAGGCTCACCACATCCTCTTTCTGGAAGGAGGCACCATCATTGAGGCGGGAACCCACCAGCAGCTCATGGCGAATGAGGGACGCTATTGGACCATGGTTCAGGCTCCTGGTGGGTCAGGTGCTCCAGAATGA

Related Sequences

bmy_14314T0 Protein

Length: 777 aa      View alignments
>bmy_14314T0
RSGRPPCYDSDSFQRLRPGEDGESPRTRAGLEPRAPMACSESPAPCGCLRLSRASLACLGTALLLLADWMLLRLALPRIASLLVPPALPLLRVWVAGLSRWAVLWLGARGVLGAALGFRRESAGVRGWLAALEPLAAVLGLALPGLASFRELGSWGAPRDADSTRPLHWGSRLDAFALSYTAALAAAALWHKIRSLWVQGAHGASGVAVSRLLGFLGPEKERLPLILTLLVLSCLGEMAVPFFTGRFTDWILHDRTGAAFTRNITLMSVLTIASAVLEFMADGIYNSTMGRVRSHLQGEVFRAVLRQETEFFQKNQTGAITSRVTEDTSTMSESLSSQLSLLLWYLGRGLCLLGLMLWGSPSLTMVTLLALPLLFLLPKKLGKWHKVLAAQVQESLAESSQVAIEVLSAMPTVRSFANEEGEAQKFRQKLHEMKTLNQKEALAYAVNLWTTSISGLLLKVGILYFGGQLVTSGSVSSGHLVTFVLYQIQFTTAVEVLLFVYPRVQKAVGSSEKIFEYLDRIPRCPASGVFTSLKLQGLVQFQGVSFAYPNRLDVPVLQVTALVGPNGSGKSTVAALLQNLYQPTEGQVLLDGEPLPKYEHRYLHRQVAAVGQEPQLFGRSFKENIAYGLVQKPTMEDITAAAVESGAHGFISVLPQGYDTEVGEAGGQLSGGQRQTVALARALIRKPCVLILDDATSALDANSQSRVEQLLYESPERCSRSVLLITQRLSSLKQAHHILFLEGGTIIEAGTHQQLMANEGRYWTMVQAPGGSGAPE*