KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:57:17 2014 Check: 00 .. Name: ENSBTAP00000045934/1-750 Len: 830 Check: 1696 Weight: 1.00 Name: ENSTTRP00000004016/1-811 Len: 830 Check: 7718 Weight: 1.00 Name: bmy_14314T0/1-776 Len: 830 Check: 3674 Weight: 1.00 Name: BACU012236/1-768 Len: 830 Check: 7883 Weight: 1.00 // 1 50 ENSBTAP00000045934/1-750 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004016/1-811 TALQASAGSA GSRDFPAPTR LSLPGAVRGP ALLRLNSVQR RLRLGEDGES bmy_14314T0/1-776 ---------- ---------- ------RSGR PPCYDSDSFQ RLRPGEDGES BACU012236/1-768 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000045934/1-750 ---------- --MACSGSPV PRGRPRLPRA AVGWLGTALL LLADWMLLRP ENSTTRP00000004016/1-811 PRPGPA-SNR APMACSESPA PCGCLRLSRA SLACLGTALL LLADWMLLRL bmy_14314T0/1-776 PRTRAGLEPR APMACSESPA PCGCLRLSRA SLACLGTALL LLADWMLLRL BACU012236/1-768 ---------- --MACSESPA PCGCLRLSRA SLACLGTALL LLADWMLLRL 101 150 ENSBTAP00000045934/1-750 ALPRVASRLV PPELPLLRVW VAGLSRCALL WLGARGVVGA ALGFRRESTR ENSTTRP00000004016/1-811 ALPRIASLLV PPALPLLSVW VAGLSRWAVL WLGARGVLGA ALGFRRESAG bmy_14314T0/1-776 ALPRIASLLV PPALPLLRVW VAGLSRWAVL WLGARGVLGA ALGFRRESAG BACU012236/1-768 ALPRIASLLV PPALPLLRVW VAGLSRWAVL WLGARGVLGA ALGFRRESAG 151 200 ENSBTAP00000045934/1-750 VLGWLAVLEP LAAALGLALP GLALFRELVS WRAPEDADSA GHLHWEGRLD ENSTTRP00000004016/1-811 VRGWLAALEP LAAALGLALP ALASFRELRS WGAPGDAHST RPLHWGSRLD bmy_14314T0/1-776 VRGWLAALEP LAAVLGLALP GLASFRELGS WGAPRDADST RPLHWGSRLD BACU012236/1-768 VRGWLAALEP LAAVLGLALP GLASFRELGP WGARRDADST RPLHWGSRLD 201 250 ENSBTAP00000045934/1-750 AFAFSYWAAL PAATLWYKIR SLWVQGARGA FGLAMSRLLV FLGPEKSHVQ ENSTTRP00000004016/1-811 AFALSYTAAL PAAALWHKIR NLWVQGARGA SGVAVRRLLG FLVPEIQRLP bmy_14314T0/1-776 AFALSYTAAL AAAALWHKIR SLWVQGAHGA SGVAVSRLLG FLGPEKERLP BACU012236/1-768 AFALSYTAAL PAAALWHKIR SLWVQGAHGA SGVAVSRLLG FLGPEKERLP 251 300 ENSBTAP00000045934/1-750 FILALVFLSC FGEMAIPFFT GRLTDWIVQD ETAAAFTQNV TLMSVLTIAS ENSTTRP00000004016/1-811 LLLALVVLSC LGEMAVPFFT GRFTDWILQD RTGAAFARNI TLMSVLTIAS bmy_14314T0/1-776 LILTLLVLSC LGEMAVPFFT GRFTDWILHD RTGAAFTRNI TLMSVLTIAS BACU012236/1-768 LILALLVLSC LGEMAVPFFT GRFTDWILHD RTGAAFTRNI SLMSVLTIAS 301 350 ENSBTAP00000045934/1-750 AVLEFAADGI YNSTMGRVHS HLQGEVFQAV LRQETEFFQK NQTGEITSRV ENSTTRP00000004016/1-811 AVLEFTADGI YNSTMGRVHC HLQGEVFRAV LCQKTEFFQK NRTGAITSRV bmy_14314T0/1-776 AVLEFMADGI YNSTMGRVRS HLQGEVFRAV LRQETEFFQK NQTGAITSRV BACU012236/1-768 AVLEFMADGI YNSTMGRVRS LLQGEVFRAV LRQETEFFQK NQTGAITSRV 351 400 ENSBTAP00000045934/1-750 TDDTSTMSES LSSDLSLLLW YLIRGLCLLG LMLWASPSLT MITLVALPLL ENSTTRP00000004016/1-811 TEDTSTVSES LSSDLSLFLW YLCRGLCLLG LMLWGSPSLT MVTLLALPLL bmy_14314T0/1-776 TEDTSTMSES LSSQLSLLLW YLGRGLCLLG LMLWGSPSLT MVTLLALPLL BACU012236/1-768 TEDTSTMSES LSSQLSLLLW YLGRGLCLLG LMLWGSPSLT MVTLLALPLL 401 450 ENSBTAP00000045934/1-750 FLLPEKMGKW YKVLAEQVQE SLAKSSQVAI EVLSAMPTVR SFANEEGEAQ ENSTTRP00000004016/1-811 FLLPEKLGKW HKVLAAQVQE SLAKSSQVAI EVLSAMPTVR SFANEEGEAQ bmy_14314T0/1-776 FLLPKKLGKW HKVLAAQVQE SLAESSQVAI EVLSAMPTVR SFANEEGEAQ BACU012236/1-768 FLLPKKLGKW HKVLAAQVQE SLAESSQVAI EVLSAMPTVR SFANEEGEAQ 451 500 ENSBTAP00000045934/1-750 KFRQKLHEMM VLNQKEALAY AVNVWTSSLS GMLLKVGILY FGGQLVTSGS ENSTTRP00000004016/1-811 KFRQKLHEMK TLNQKEALAY AVNLWTTRIS GLLLKVGILY FGGQLVTSGS bmy_14314T0/1-776 KFRQKLHEMK TLNQKEALAY AVNLWTTSIS GLLLKVGILY FGGQLVTSGS BACU012236/1-768 KFRQKLHEMK TLNQKEALAY AVNLWTTNIS GLLLKVGILY FGGQLVTSGS 501 550 ENSBTAP00000045934/1-750 VSSGRLVTFI LYQIQFTIAV EVLLSRYPRV QKAVGFSEKI FEYLDRVPNC ENSTTRP00000004016/1-811 VSSGHLVAFV LYQNQFTTAV EVLLSIYPRL QKAVGSSEKI FEYLDQIPHC bmy_14314T0/1-776 VSSGHLVTFV LYQIQFTTAV EVLLFVYPRV QKAVGSSEKI FEYLDRIPRC BACU012236/1-768 VSSGHLVTFV LYQIQFTTAV EVLLSTYPRV QKAVGSSEKI FEYLDRIPRC 551 600 ENSBTAP00000045934/1-750 PKSGSLASLT LRGSVQFQDV SFAYPNRPDV PVLQGLTFTL RPGEVTALVG ENSTTRP00000004016/1-811 PASGVFTSLK LQGLVQFQGV SFAYPNRLDV PVLQGLTFTL RPGEVTALVG bmy_14314T0/1-776 PASGVFTSLK LQGLVQFQGV SFAYPNRLDV PVLQ------ ----VTALVG BACU012236/1-768 PASGVFTSLK LQGLVQFQGV SFAYPNRLDV PVLQGLTFTL RPGEVTALVG 601 650 ENSBTAP00000045934/1-750 PNGSGKSTVA ALLQNLYQPT EGQVLLDGEP LPKYEHRYLH RQVAAVGQEP ENSTTRP00000004016/1-811 PNGSGKSTVA ALLQNLYQPT EGQVLLDGEP LPKYEHCYLH RQVAAVGQEP bmy_14314T0/1-776 PNGSGKSTVA ALLQNLYQPT EGQVLLDGEP LPKYEHRYLH RQVAAVGQEP BACU012236/1-768 PNGSGKSTVA ALLQNLYQPT EGQVLLDGEP LPKYEHRYLH RQVAAVGQEP 651 700 ENSBTAP00000045934/1-750 LLFGRSFKEN IAYGLVQEPT MEEITAAAVE SGAHGFISEL SEGYDTEVGE ENSTTRP00000004016/1-811 QLFGRSFKEN IAYGLVQKPT MEDITAAAVE SGAHGFISVL PQGYDTEVGE bmy_14314T0/1-776 QLFGRSFKEN IAYGLVQKPT MEDITAAAVE SGAHGFISVL PQGYDTEVGE BACU012236/1-768 QLFGRSLKEN IAYGLVQKPT MEDITAAAVE SGAHGFISVL PEGYDTEVGE 701 750 ENSBTAP00000045934/1-750 AGSQLSGGQR QAVALARALI RKPRVLILDD ATSALDANSQ SLVERLLYES ENSTTRP00000004016/1-811 AGGQLSGGQR QRVALARALI RKPCVLILDD VTSALDINSQ SCVEELLYKS bmy_14314T0/1-776 AGGQLSGGQR QTVALARALI RKPCVLILDD ATSALDANSQ SRVEQLLYES BACU012236/1-768 AGGQLSGGQR QTVALARALI RKPCVLILDD ATSALDANSQ SRVEQLLYES 751 800 ENSBTAP00000045934/1-750 PERGSRSVLF ITQRLSSVEQ ADHILFLEGG TIIEAGTHQQ LMTNEGRYWA ENSTTRP00000004016/1-811 PERCSRSVLL ITQRLSLVKQ AHHILFLEGG TIIEAGTHQQ LMANKGRYCT bmy_14314T0/1-776 PERCSRSVLL ITQRLSSLKQ AHHILFLEGG TIIEAGTHQQ LMANEGRYWT BACU012236/1-768 PERCSRSVLL ITQRLSSLKQ AHHILFLEGG TIIEAGTHQQ LMANEGRYWT 801 850 ENSBTAP00000045934/1-750 MVQAPGGPGA PE-------- ---------- ENSTTRP00000004016/1-811 MVQAPGGSGA PE-------- ---------- bmy_14314T0/1-776 MVQAPGGSGA PE-------- ---------- BACU012236/1-768 MVQAPGGSGA PEKDSSDPHT PSPSLFPSSL