Part of scaffold_959 (Scaffold)

For more information consult the page for scaffold_959 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ITGA1 ENSTTRG00000001856 (Bottlenosed dolphin)

Gene Details

integrin, alpha 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001746, Bottlenosed dolphin)

Protein Percentage 97.21%
cDNA percentage 97.39%
Ka/Ks Ratio 0.38551 (Ka = 0.0188, Ks = 0.0487)

BT.83070 ENSBTAG00000016525 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000034473, Cow)

Protein Percentage 93.16%
cDNA percentage 93.3%
Ka/Ks Ratio 0.24556 (Ka = 0.0402, Ks = 0.1639)

ITGA1  (Minke Whale)

Gene Details

integrin, alpha 1

External Links

Gene match (Identifier: BACU016735, Minke Whale)

Protein Percentage 97.49%
cDNA percentage 97.86%
Ka/Ks Ratio 0.50178 (Ka = 0.0173, Ks = 0.0344)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2151 bp    Location:114467..64555   Strand:-
>bmy_14227
ATGGTAAAATACTTGGGGCCAGTGAGTATATCCAGCATCTCTCTTTCGTTAGGTTACACAGTAAACTCCGCCACTGTTTCTGGAGATGTGCTGTACATTGCCGGACAGCCACGGTACAATCATACAGGCCAGGTGGTCATCTACAGGATGGAGGATGGAGACATCAGGATTCTCCAGACACTCCATGGAGAACAGATCGGTTCCTACTTTGGAAGTGTTTTAACGACAATTGACATTGATAAAGATTCTAATACTGACATTCTTCTAGTCGGGGCTCCCATGTTCATGGGAACAGAGAAGGAGGAACAAGGAAAAGTGTACGTCTATGCTCTGAATCAGACAAGGTTTGAATATCAAATGAGCCTGGAACCCATGAAGCAGACTTGCTGTTCATCTCTGAAGCACAATTCGTGCACAAAGGAAAACAAAAATGAACCATGTGGGGCTCGTTTTGGAACAGCTATTTCTGCTGTGAAAGACCTCAATCTTGATGGATTTAATGACATCGTGATAGGAGCACCCCTGGAAGATGATCATGGGGGAGCCGTGTACATTTATCATGGAAGTGGCAAGACTATAAGGGAAGAGTATGCACAACGTATTCCATCAGGGGGAGATGGCGAGACACTGAAATTTTTTGGCCAGTCTATCCACGGAGAAATGGATTTAAATGGTGACGGTCTGACTGATGTCACTATTGGGGGCCTTGGTGGTGCTGCCCTCTTCTGGTCCCGAGATGTGGCTGTAGTTAAAGTGACCATGAATTTTGAACCCAATAAAGTGAATATTCAAAAGAAAAACTGCCGCGTGGAGGGAAAGGAAACAGTATGCATAAATGCCACAGTGTGTTTTGATGTGAAATTGAAGTCCAAAGAAGACAGGGTTTACGAAGCTGATATGCAGTACCGTATCACACTAGATTCTCTAAGACAGATATCACGGAGTTTTTTCTCTGGAACTCAAGAGAGGAAGATTCAAAGAAACATCACAGACAAGCATGACTTTCGGGACTCCGTGAGAATAACTTTGGATTTTAATCTTACCGATCCAGAAAATGGGCCCGTTCTTGATGATTCTCTACCAAATTCAGTACATGAATATATTCCCTTTGCCAAAGATTGTGGAAACAAGGAAAAATGTATCTCGGACCTCGTCCTGGATGTCTCCACCACAGAAAAGGGCCTGCTTATTGTCAGGTCCCACAATGATAAGTTCAATGTTAGCCTCACAGTCAAAAATAAAGAGGACAGTGCCTATAACACMAGAACCATAGTGAATTATTCTCCAAATCTAATTTTTTCAGGAATTGAGGCTATCCAAAAAGACAGTTGTGAATCCAATCGTAATATCACATGTAAAGTTGGATATCCTTTCCTAAGAAGAGGAGAAATGGTAACATTCAAAATATTATTTCAGTTTAACTCATCTTATCTCATGGAAAATGTGATCATTCATTTAAGTACAACAAGCTCTGCAAGTGAATACCATATTTCAATTGCGGCCAACGAGACAGTCCCTGAAGTTATTAGTTCTACTGAGGACATTGGAAACGAAATTAATATCTTCTACTTGATTAGAAAAAGTGGGCATTTTCCAATGCCAGAACTTAAGCTGTCAATTTCATTCCCCAACATGACATCAGATGGTTTTCCTGTACTGTACTCAAGTGGGTGGTCATCTTCTGAGAATGTCAACTGCAGACCCAGTAGCCTCCAGGATCCTTTTGGTATCAACTCTGGGAAGAAAATGATAATATCCAAATCTGAAGATATCAAACGAGGCACCATTCTGGACTGCAGTGCATGTAAATTTGCCACCATCACGTGTAATCTGATTCCTTCTGACATGAGCCAAGTGAATGTTTCACTTATCTTATGGAAACCAACTTTTATAAAAGCACATTTTTCCAGCTTAAATCTTACTGTAAGGGCAGAACTTCAGAGTGAAAATACATCACTAGTTTTAAGTCCTGGCAATCAAAAAAGAGAGCTTGCTATTCAAATATCCAAAGATGGGCTACCAGGCAGAGTGCCGTTATGGGTTATCCTGTTGAGTGCTTTTGCTGGATTATTGCTATTAATGCTGCTCATATTAGCACTGTGGAAGATTGGATTCTTCAAAAGACCACTAAAGAAGAAAATGGAGAAATGA

Related Sequences

bmy_14227T0 Protein

Length: 717 aa      View alignments
>bmy_14227T0
MVKYLGPVSISSISLSLGYTVNSATVSGDVLYIAGQPRYNHTGQVVIYRMEDGDIRILQTLHGEQIGSYFGSVLTTIDIDKDSNTDILLVGAPMFMGTEKEEQGKVYVYALNQTRFEYQMSLEPMKQTCCSSLKHNSCTKENKNEPCGARFGTAISAVKDLNLDGFNDIVIGAPLEDDHGGAVYIYHGSGKTIREEYAQRIPSGGDGETLKFFGQSIHGEMDLNGDGLTDVTIGGLGGAALFWSRDVAVVKVTMNFEPNKVNIQKKNCRVEGKETVCINATVCFDVKLKSKEDRVYEADMQYRITLDSLRQISRSFFSGTQERKIQRNITDKHDFRDSVRITLDFNLTDPENGPVLDDSLPNSVHEYIPFAKDCGNKEKCISDLVLDVSTTEKGLLIVRSHNDKFNVSLTVKNKEDSAYNTRTIVNYSPNLIFSGIEAIQKDSCESNRNITCKVGYPFLRRGEMVTFKILFQFNSSYLMENVIIHLSTTSSASEYHISIAANETVPEVISSTEDIGNEINIFYLIRKSGHFPMPELKLSISFPNMTSDGFPVLYSSGWSSSENVNCRPSSLQDPFGINSGKKMIISKSEDIKRGTILDCSACKFATITCNLIPSDMSQVNVSLILWKPTFIKAHFSSLNLTVRAELQSENTSLVLSPGNQKRELAIQISKDGLPGRVPLWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKKMEK*