KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:44:29 2014 Check: 00 .. Name: ENSP00000282588/1-1179 Len: 1184 Check: 1747 Weight: 1.00 Name: ENSBTAP00000034473/1-1172 Len: 1184 Check: 1347 Weight: 1.00 Name: bmy_14227T0/1-716 Len: 1184 Check: 1349 Weight: 1.00 Name: BACU016735/1-1178 Len: 1184 Check: 9457 Weight: 1.00 Name: ENSTTRP00000001746/1-1178 Len: 1184 Check: 8770 Weight: 1.00 // 1 50 ENSP00000282588/1-1179 MAPRPRARPG VAVACCWL-- --LTVVLRCC VSFNVDVKNS MTFSGPVEDM ENSBTAP00000034473/1-1172 ---------- -LTLCNWMFV SSLKVVLRFC VSFNIDVKNS MTFSGPVEDM bmy_14227T0/1-716 ---------- ---------- ---------- ---------M VKYLGPV--- BACU016735/1-1178 MAPRRRASPG VAVACCWL-- --LT-VLGFC ISFNVDVKNS LTFSGPVEDM ENSTTRP00000001746/1-1178 MDPRRRASPG IAVACCWL-- --LT-VLGFC ISFNVDVKNS LTFSGPVEDM 51 100 ENSP00000282588/1-1179 FGYTVQQYEN EEGKWVLIGS PLVGQPKNRT GDVYKCPVGR GESLPCVKLD ENSBTAP00000034473/1-1172 FGYTVQQYEN EEGKWVLIGS PLVGQPKNRT GDVYKCPVGR SESLPCIKLD bmy_14227T0/1-716 ---------- ---------- ---------- ---------- --SISSISLS BACU016735/1-1178 FGYTVQQYEN EEGKWVLIGS PLVGQPKNRT GDVYKCPVGR GESLPCIKLD ENSTTRP00000001746/1-1178 FGYTVQQYEN AEGKWVLVGS PLVGQPKNRT GDVYKCPVGR GESLPCIKLD 101 150 ENSP00000282588/1-1179 LPVNTSIPNV TEVKENMTFG STLVTNPNGG FLACGPLYAY RCGHLHYTTG ENSBTAP00000034473/1-1172 LPVNTSIPNV TEVKENMTFG STLVTNPKGG FLACGPLYAY RCGHLHYTTG bmy_14227T0/1-716 ---------- ---------- ---------- ---------- ---------- BACU016735/1-1178 LPVNTSIPNV TEVKENMTFG STLVTNPNGG FLACGPLYAY RCGHLHYTTG ENSTTRP00000001746/1-1178 LPVNTSIPNV TEVKENMTFG STLVTNPNGG FLACGPLYAY RCGHLHYTTG 151 200 ENSP00000282588/1-1179 ICSDVSPTFQ VVNSIAPVQE CSTQLDIVIV LDGSNSIYPW DSVTAFLNDL ENSBTAP00000034473/1-1172 ICSDVSPTFQ VVNSIAPVQE CSTQLDIVIV LDGSNSIYPW ESVTAFLNDL bmy_14227T0/1-716 ---------- ---------- ---------- ---------- ---------- BACU016735/1-1178 ICSDVSPTFQ VVNSIAPVQE CSTQLDIVIV LDGSNSIYPW ESVTAFLNDL ENSTTRP00000001746/1-1178 ICSDVSPTFQ VVNSIAPVQE CSTQLDIVIV LDGSNSIYPW ESVTAFLNDL 201 250 ENSP00000282588/1-1179 LERMDIGPKQ TQVGIVQYGE NVTHEFNLNK YSSTEEVLVA AKKIVQRGGR ENSBTAP00000034473/1-1172 LKRMDIGPKQ TQVGIVQYGE NVTHEFNLNK YSSTEEVLVA AKKIVQRGGR bmy_14227T0/1-716 ---------- ---------- ---------- ---------- ---------- BACU016735/1-1178 LERMDIGPKQ TQVGIVQYGE NVTHEFNLNK YSSTEEVLVA ANKIVQRGGR ENSTTRP00000001746/1-1178 LERMDIGPKQ TQVGIVQYGE NVTHEFNLNK YSSTEEVLVA ANKIVQRGGR 251 300 ENSP00000282588/1-1179 QTMTALGIDT ARKEAFTEAR GARRGVKKVM VIVTDGESHD NHRLKKVIQD ENSBTAP00000034473/1-1172 QTMTALGIDT ARKEAFTEAR GARRGVKKVM VIVTDGESHD NHRLNKVIQD bmy_14227T0/1-716 ---------- ---------- ---------- ---------- ---------- BACU016735/1-1178 QTMTALGIDT ARKEAFTEAR GARRGVKKVM VIVTDGESHD NHQLNKVIQD ENSTTRP00000001746/1-1178 QTMTALGIDT ARKEAFTEAR GARRGVKKVM VIVTDGESHD NHQLNKVIQD 301 350 ENSP00000282588/1-1179 CEDENIQRFS IAILGSYNRG NLSTEKFVEE IKSIASEPTE KHFFNVSDEL ENSBTAP00000034473/1-1172 CEDESIQRFS IAILGSYNRG NLSTEKFVEE IKSIASEPTE KHFFNVSDEL bmy_14227T0/1-716 ---------- ---------- ---------- ---------- ---------- BACU016735/1-1178 CEEESIQRFS IAILGSYNRG NLSTEKFVEE IKSIASEPTE KHFFNVSDEL ENSTTRP00000001746/1-1178 CEDESIQRFS IAILGSYNRG NLSTEKFVEE IKSIASEPTE KHFFNVSDEL 351 400 ENSP00000282588/1-1179 ALVTIVKTLG ERIFALEATA DQSAASFEME MSQTGFSAHY SQDWVMLGAV ENSBTAP00000034473/1-1172 ALVTIVEALG ERIFALEATV DQSAASFEME MSQTGFSAHY SQDWIMLGAV bmy_14227T0/1-716 ---------- ---------- ---------- ---------- ---------- BACU016735/1-1178 ALVTIVEALG ERIFALEATA DQSAASFEME MSQTGFSAHY SQDWVMLGAV ENSTTRP00000001746/1-1178 ALVTIVEALG ERIFALEATA DQSAASFEME MSQTGFSAHY SQDWVMLGAV 401 450 ENSP00000282588/1-1179 GAYDWNGTVV MQKASQIIIP RNTTFNVEST KKNEPLASYL GYTVNSATAS ENSBTAP00000034473/1-1172 GAYDWNGTVV MQKADQSVIP QNTTFNVEST KKNEPLASYL GYTVSSATT- bmy_14227T0/1-716 ---------- ---------- ---------- ---------L GYTVNSATV- BACU016735/1-1178 GAYDWNGTVV MQKANQIIIP QNMTFNVEST KKNEPLASYL GYTVNSATV- ENSTTRP00000001746/1-1178 GAYDWNGTVV MQKANQILIP QNTTFNVEST KKNEPLASYL GYTVNSATV- 451 500 ENSP00000282588/1-1179 SGDVLYIAGQ PRYNHTGQVI IYRMEDGNIK ILQTLSGEQI GSYFGSILTT ENSBTAP00000034473/1-1172 PGDVLYIAGQ PRYNHTGQVV IYRMEGRDIR ILQTLNGEQI GSYFGSVLTT bmy_14227T0/1-716 SGDVLYIAGQ PRYNHTGQVV IYRMEDGDIR ILQTLHGEQI GSYFGSVLTT BACU016735/1-1178 SGDVLYIAGQ PRYNHTGQVV IYRMEDGDIR ILQTLNGEQI GSYFGSVLTT ENSTTRP00000001746/1-1178 SGDVLYIAGQ PRYNHTGQVV IYRMEDGDIR ILQTLHGEQI GSYFGSVLTT 501 550 ENSP00000282588/1-1179 TDIDKDSNTD ILLVGAPMYM GTEKEEQGKV YVYALNQTRF EYQMSLEPIK ENSBTAP00000034473/1-1172 TDIDKDSNTD ILLVGAPMFM GREKEEQGKV YVYALNQTRF EYQMSLEPIK bmy_14227T0/1-716 IDIDKDSNTD ILLVGAPMFM GTEKEEQGKV YVYALNQTRF EYQMSLEPMK BACU016735/1-1178 IDIDKDSNTD ILLVGAPMFM GTEKEEQGKV YIYALNQTRF EYQMSLEPMK ENSTTRP00000001746/1-1178 VDIDKDSNTD ILLVGAPMFM GTEKEEQGKV YIYALNQTRF EYQMSLEPMK 551 600 ENSP00000282588/1-1179 QTCCSSRQHN SCTTENKNEP CGARFGTAIA AVKDLNLDGF NDIVIGAPLE ENSBTAP00000034473/1-1172 QTCCSSLKHN SCTKENRNEP CGARFGTAIA AVKDLNLDGF NDIVIGAPLE bmy_14227T0/1-716 QTCCSSLKHN SCTKENKNEP CGARFGTAIS AVKDLNLDGF NDIVIGAPLE BACU016735/1-1178 QTCCSSLKHN SCTKENKNEP CGARFGTAIS AVKDLNLDGF NDIVIGAPLE ENSTTRP00000001746/1-1178 QTCCSSLKHN SCTKENKNEP CGARFGTAIS AVKDLNLDGF NDIVIGAPLE 601 650 ENSP00000282588/1-1179 DDHGGAVYIY HGSGKTIRKE YAQRIPSGGD GKTLKFFGQS IHGEMDLNGD ENSBTAP00000034473/1-1172 DDHGGAVYIY HGSGKTIREE YAQRIPSGGD GETLKFFGQS IHGEMDLNGD bmy_14227T0/1-716 DDHGGAVYIY HGSGKTIREE YAQRIPSGGD GETLKFFGQS IHGEMDLNGD BACU016735/1-1178 DDHGGAVYIY HGSGKTIREE CAQRIPSGGD GETLKFFGQS IHGEMDLNGD ENSTTRP00000001746/1-1178 DDHGGAVYIY HGSGKTIREE YAQRIPSGGD GETLKFFGQS IHGEMDLNGD 651 700 ENSP00000282588/1-1179 GLTDVTIGGL GGAALFWSRD VAVVKVTMNF EPNKVNIQKK NCHMEGKETV ENSBTAP00000034473/1-1172 GLTDVTIGGL GGAALFWSRD VAVVKVTMNF EPNKVNIQKK NCRVEGKETV bmy_14227T0/1-716 GLTDVTIGGL GGAALFWSRD VAVVKVTMNF EPNKVNIQKK NCRVEGKETV BACU016735/1-1178 GLTDVTIGGL GGAALFWSRD VAVVKVTMNF EPNKVNIQKK NCRMEGKETV ENSTTRP00000001746/1-1178 GLTDVTIGGL GGAALFWSRD VAVVKVTMNF EPNKVNIQKK NCRVEGKETV 701 750 ENSP00000282588/1-1179 CINATVCFDV KLKSKEDTIY EADLQYRVTL DSLRQISRSF FSGTQERKVQ ENSBTAP00000034473/1-1172 CINGTVCFNV KLKSKENVVY EADMQYRVTL DSLRQISRSF FSGTQERKIQ bmy_14227T0/1-716 CINATVCFDV KLKSKEDRVY EADMQYRITL DSLRQISRSF FSGTQERKIQ BACU016735/1-1178 CINATVCFDV KLKSKEDRVY EADMQYRITL DSLRQISRSF FSGTQERKIQ ENSTTRP00000001746/1-1178 CINATVCFDV KLKSKEDRVY EADMQYRITL DSLRQISRSF FSGTQERKIQ 751 800 ENSP00000282588/1-1179 RNITVRKSEC TKHSFYMLDK HDFQDSVRIT LDFNLTDPEN GPVLDDSLPN ENSBTAP00000034473/1-1172 RNITVRESEC TKHSFYMLDK HDFRDSVRIT LDFNLTDPEN GPVLDDSLPN bmy_14227T0/1-716 RNIT------ --------DK HDFRDSVRIT LDFNLTDPEN GPVLDDSLPN BACU016735/1-1178 RNITVRESEC TKHSFYMLDK HDFRDSVRIT LDFNLTDPEN GPVLDDSLPN ENSTTRP00000001746/1-1178 RNITVRESEC TKHSFYMLDK HDFRDSVRIT LDFNLTDPEN GPVLDDALPN 801 850 ENSP00000282588/1-1179 SVHEYIPFAK DCGNKEKCIS DLSLHVATTE KDLLIVRSQN DKFNVSLTVK ENSBTAP00000034473/1-1172 SVHEYIPFAK DCGNKEKCVS DLALDVSTTE KGLLIVKSHN DKFNVSLTVK bmy_14227T0/1-716 SVHEYIPFAK DCGNKEKCIS DLVLDVSTTE KGLLIVRSHN DKFNVSLTVK BACU016735/1-1178 SVHEYIPFAK DCGNKEKCIS DLVLDVSTTE KGLLIVRSHN DKFNVSLTVK ENSTTRP00000001746/1-1178 SVHEYIPFAK DCGNKEKCIS DLALDVSTTE KGLLIVRSHN DKFNVSLTVK 851 900 ENSP00000282588/1-1179 NTKDSAYNTR TIVHYSPNLV FSGIEAIQKD SCESNHNITC KVGYPFLRRG ENSBTAP00000034473/1-1172 NKKDSAYNTR TIVNYSPNLI FSGIEAIQKD SCESNHNITC KVGYPFLRKG bmy_14227T0/1-716 NKEDSAYNTR TIVNYSPNLI FSGIEAIQKD SCESNRNITC KVGYPFLRRG BACU016735/1-1178 NKEDSAYNTR TIVNYSPNLI FSGIEAIQKD SCESNRNITC KVGYPFLRRG ENSTTRP00000001746/1-1178 NKEDSAYNTR TIVNYSPNLI FSGIEAIQKD SCESNHNITC KVGYPFLRRG 901 950 ENSP00000282588/1-1179 EMVTFKILFQ FNTSYLMENV TIYLSATSDS EEPPETLSDN VVNISIPVKY ENSBTAP00000034473/1-1172 EMVTFKILFQ FNTSYLMENV IIHLSATSDS EEPPETLFDN EVNISIPVKY bmy_14227T0/1-716 EMVTFKILFQ FNSSYLMENV IIHLSTT--- ---------- ---------- BACU016735/1-1178 EMVTFKILFQ FNSSYLMENV IIHLSTTSDS EEPPEALFDN EVNVSIPVKY ENSTTRP00000001746/1-1178 EMVTFKILFQ FNSSYLMENV IIHLSTTSDS EEPPEALFDN EVNVSIPVKY 951 1000 ENSP00000282588/1-1179 EVGLQFYSSA SEYHISIAAN ETVPEVINST EDIGNEINIF YLIRKSGSFP ENSBTAP00000034473/1-1172 EVGLQFFSSA SEYHISIAAN ETVPEIINST EDLGNEIDIF YLIRKSGHFP bmy_14227T0/1-716 -------SSA SEYHISIAAN ETVPEVISST EDIGNEINIF YLIRKSGHFP BACU016735/1-1178 EVGLQFYSSA SEYHISIAAN ETVPEVISST EDIGNEINIF YLIRKSGHFP ENSTTRP00000001746/1-1178 EVGLQFYSSA SEYHISIAAN ETVPEIISST EDIGNEINIF YLIRKSGHFP 1001 1050 ENSP00000282588/1-1179 MPELKLSISF PNMTSNGYPV LYPTGLSSSE NANCRPHIFE DPFSINSGKK ENSBTAP00000034473/1-1172 MPELKLTISF PNVTSDGFPV LYPSGWSSSE NVNCIPSNLQ DPFGINTGKK bmy_14227T0/1-716 MPELKLSISF PNMTSDGFPV LYSSGWSSSE NVNCRPSSLQ DPFGINSGKK BACU016735/1-1178 MPELKLSISF PNMTSGGFPV LYSNGWSSSE NVNCRPSSLQ DPFGINSGKK ENSTTRP00000001746/1-1178 MPELKLSISF PNMTSDGFPV LYSSGWSSSE NVNCRPSSLQ DPFGINSGKK 1051 1100 ENSP00000282588/1-1179 MTTS-TDHLK RGTILDCNTC KFATITCNLT SSDISQVNVS LILWKPTFIK ENSBTAP00000034473/1-1172 MMISKSEDIK RGTILDCSAC KFATITCNLI PSDMSQVNVS LILWKPTFIK bmy_14227T0/1-716 MIISKSEDIK RGTILDCSAC KFATITCNLI PSDMSQVNVS LILWKPTFIK BACU016735/1-1178 MIISKSEDIK RGTILDCSAC KFATITCNLI PSDMSQVNVS LILWKPTFIK ENSTTRP00000001746/1-1178 MIISKSEDIK RGTILDCSAC KFATITCNLI PSDMSQVNVS LILWKPTFIK 1101 1150 ENSP00000282588/1-1179 SYFSSLNLTI RGELRSENAS LVLSSSNQKR ELAIQISKDG LPGRVPLWVI ENSBTAP00000034473/1-1172 AHFSSLNLTV RAELQSENAT LVLSAGNQKR ELAIQISKDG LPGRVPLWVI bmy_14227T0/1-716 AHFSSLNLTV RAELQSENTS LVLSPGNQKR ELAIQISKDG LPGRVPLWVI BACU016735/1-1178 AHFSSLNLTV RAELQSENTS LVLSAGNQKR ELAIQISKDG LPGRVPLWVI ENSTTRP00000001746/1-1178 AHFSSLNLTI GAELQSENTS LVLSAGNQKR ELAIQISKDG LPGRVPLWVI 1151 1200 ENSP00000282588/1-1179 LLSAFAGLLL LMLLILALWK IGFFKRPLKK KMEK ENSBTAP00000034473/1-1172 LLSAFAGLLL LMLLILALWK IGFFKRPLKK KMEK bmy_14227T0/1-716 LLSAFAGLLL LMLLILALWK IGFFKRPLKK KMEK BACU016735/1-1178 LLSAFAGLLL LMLLILALWK IGFFKRPLKK KMEK ENSTTRP00000001746/1-1178 LLSAFAGLLL LMLLILALWK IGFFKRPLKK KMEK