Sequence details bmy_14220 (Coding sequence)

Part of scaffold_957 (Scaffold)

For more information consult the page for scaffold_957 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PDCD1 ENSTTRG00000001984 (Bottlenosed dolphin)

Gene Details

programmed cell death 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001861, Bottlenosed dolphin)

Protein Percentage 73.78%
cDNA percentage 79.47%
Ka/Ks Ratio 0.41662 (Ka = 0.1318, Ks = 0.3164)

PDCD1 ENSBTAG00000011543 (Cow)

Gene Details

programmed cell death protein 1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000015337, Cow)

Protein Percentage 83.95%
cDNA percentage 87.65%
Ka/Ks Ratio 0.16702 (Ka = 0.0761, Ks = 0.4553)

Additional orthologs identified in other species via the OPTIC pipeline.

PDCD1 (Human)   Pdcd1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 507 bp    Location:682593..672278   Strand:-
Raw sequence 
>bmy_14220
ATGGGGACCCCGCGGGCACTGTGGCCACTCGTCTGGGCCGTGCTGCAGCTGGGCTGGCGGCCAGGATGGCTCCTAGAGGGAGTCCTGGAGCTGCCCACAGAGCGCCCCAGCCCCCCACCCAGGCCCGAAGGCCACTTGCAGCGCCTGGTCACCGGCGTCACAGGCGCCCTGCTGGGCGTTCTGCTGCTGCTGCTGCTGACCTGGGTCCTGGCGGCCGTCTTCCTCTGGGCCACTCGAGAGGGCTGCGCGCGCAGGAGCGAAGACCAGCCTCCGGAGGAGGGCTCCCCCGCCGGGCCTGCGTGCACCGTGGACTACGGAGAGCTGGACTTCCAGTGGCGAGAGGAGACCCCGGAGCCCCCGGCCCCCTGTGTCCCTGAGCAGACCGAGTACGCCACCATCGTCTTTCCGGGCAGGCCGGGCTCCCCAGGCCGCAGGGCTTCCGCAGACAGCCCGCAGGGGCCCCGGCCTCTGAGGACTGAGGACGGACACTGCTCCTGGCCCCTCTGA

Related Sequences

bmy_14220T0 Protein

Length: 169 aa      View alignments
>bmy_14220T0
MGTPRALWPLVWAVLQLGWRPGWLLEGVLELPTERPSPPPRPEGHLQRLVTGVTGALLGVLLLLLLTWVLAAVFLWATREGCARRSEDQPPEEGSPAGPACTVDYGELDFQWREETPEPPAPCVPEQTEYATIVFPGRPGSPGRRASADSPQGPRPLRTEDGHCSWPL*