KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:55:22 2014 Check: 00 .. Name: ENSP00000335062/1-288 Len: 304 Check: 5943 Weight: 1.00 Name: ENSBTAP00000015337/1-282 Len: 304 Check: 4138 Weight: 1.00 Name: ENSTTRP00000001861/1-259 Len: 304 Check: 1894 Weight: 1.00 Name: bmy_14220T0/1-168 Len: 304 Check: 7197 Weight: 1.00 Name: BACU011055/1-302 Len: 304 Check: 6208 Weight: 1.00 // 1 50 ENSP00000335062/1-288 MQIPQAPWPV VWAVLQLGWR PGWFLDSPDR PWNPPTFSPA LLVVTEGDNA ENSBTAP00000015337/1-282 MGTPRALWPL VWAVLQLGCW PGWLLEASSR PWSALTFSPP RLVVPEGANA ENSTTRP00000001861/1-259 ---------- ---------- ------APSR PWSPLTFSPA RLTVPEGANA bmy_14220T0/1-168 MGTPRALWPL VWAVLQLGWR PGWLL----- ---------- ---------- BACU011055/1-302 MGIPRALWPL VWAVLQLGWQ PGWLLDAPSR PWSTPTFSPA RLTVPEGANA 51 100 ENSP00000335062/1-288 TFTCSFSNTS ESFVLNWYRM SPSNQTDKLA AFPEDRSQPG QDCRFRVTQL ENSBTAP00000015337/1-282 TFTCSFSSKP ERFVLNWYRK SPSNQMDKLA AFPEDRSQPS RDRRFRVTPL ENSTTRP00000001861/1-259 TFTCSFSSKP EHFVLNWYRM SPSNQTDKLA AFPEDRSQPG RDRRFHVTPL bmy_14220T0/1-168 ---------- ---------- ---------- ---------- ---------- BACU011055/1-302 TFTCSFSSKP EHFVLNWYRM SPSNQTDKLA AFPEDRSQPG RDRRFHVTPL 101 150 ENSP00000335062/1-288 PNGRDFHMSV VRARRNDSGT YLCGAISLAP KAQIKESLRA ELRVTERRAE ENSBTAP00000015337/1-282 PDGQQFNMSI VAAQRNDSGV YFCGAIYLPP RTQINESHSA ELMVTEAVLE ENSTTRP00000001861/1-259 PGGRHFHMSI MAAQRNDSGV YFCGAIYLPP KTQINESRPA ELTVTEGVLE bmy_14220T0/1-168 ---------- ---------- ---------- ---------- -----EGVLE BACU011055/1-302 PGGRRFHMSI LAAQRNDSGV YFCGAIYLPP KTQINESRPA ELTVTEGVLE 151 200 ENSP00000335062/1-288 VPTAHPSPSP RPAGQFQTLV VGVVGGLLGS --LVLLVWVL AVICSRAARG ENSBTAP00000015337/1-282 PPTEPPSPQP RPEGQMQSLV IGVTSVLLGV LLLPPLIWVL AAVFLRATRG ENSTTRP00000001861/1-259 LPTERPSPPP RTEGQLQGLV ARVTSVLLS- --LVLLTWVL AAVFLWATRX bmy_14220T0/1-168 LPTERPSPPP RPEGHLQRLV TGVTGALLGV LLLLLLTWVL AAVFLWATRE BACU011055/1-302 LPTERPSPPP RPEGQLQGLV TGITSALLGV LLLLLLTWVL AAVFLWATGG 201 250 ENSP00000335062/1-288 TIGARRTG-- ---------- --QPLKEDPS AVPVFSVDYG ELDFQWREKT ENSBTAP00000015337/1-282 GCARRSQD-- ---------- --QPPKEGCP SVPAVTVDYG ELDFQWREKT ENSTTRP00000001861/1-259 XXXXXXXX-- ---------- --XXXKEGSS TGPACTVDYG ELDFQWREKT bmy_14220T0/1-168 GCARRSED-- ---------- --QPPEEGSP AGPACTVDYG ELDFQWREET BACU011055/1-302 NAPPVPTGAA HSLPPFTPPL LLAPPKEGSP AGPACTVDYG ELDFQWREET 251 300 ENSP00000335062/1-288 PEPPVPCVPE QTEYATIVFP SGMGTSSPAR RGSADGPRSA QPLRPEDGHC ENSBTAP00000015337/1-282 PEPAAPCVPE QTEYATIVFP G--------R RASADSPQGP WPLRTEDGHC ENSTTRP00000001861/1-259 PEPPAPCVPE QTEYATIVFP GRPG--SPSR RASADSPQGP RPLRTEDGHC bmy_14220T0/1-168 PEPPAPCVPE QTEYATIVFP GRPG--SPGR RASADSPQGP RPLRTEDGHC BACU011055/1-302 PEPPAPCVPE QTEYATIVFP GRPG--SPGR RASADSPQGP RPLRTEDGHC 301 350 ENSP00000335062/1-288 SWPL ENSBTAP00000015337/1-282 SWPL ENSTTRP00000001861/1-259 SWPL bmy_14220T0/1-168 SWPL BACU011055/1-302 SWPL