Part of scaffold_935 (Scaffold)

For more information consult the page for scaffold_935 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

OPN1SW ENSTTRG00000014605 (Bottlenosed dolphin)

Gene Details

opsin 1 (cone pigments), short-wave-sensitive

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013849, Bottlenosed dolphin)

Protein Percentage 85.59%
cDNA percentage 90.2%
Ka/Ks Ratio 0.55547 (Ka = 0.0915, Ks = 0.1647)

OPN1SW ENSBTAG00000016485 (Cow)

Gene Details

Short-wave-sensitive opsin 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000021912, Cow)

Protein Percentage 85.96%
cDNA percentage 88.54%
Ka/Ks Ratio 0.28872 (Ka = 0.0859, Ks = 0.2975)

OPN1SW  (Minke Whale)

Gene Details

opsin 1 (cone pigments), short-wave-sensitive

External Links

Gene match (Identifier: BACU006817, Minke Whale)

Protein Percentage 88.33%
cDNA percentage 91.31%
Ka/Ks Ratio 0.51894 (Ka = 0.079, Ks = 0.1522)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1182 bp    Location:673287..670223   Strand:-
>bmy_14118
ATGAGCAAGATGTCAGAGGAGGAGGAGTTTTTTCTGTTCAAGAACATCTCCTTGGTGGGGCCGTGGGATGGGCCTCAGTACCACCTCACCCCTGTCTGGGTCTTCCACCTCCAGGCAGCCTTCATGGGCTTTGTCTTCTTTGTAGGGACGCCACTCAGTGCCACAGTGCTGGTGGCCAGACTGCGCTACAGAAAGTTGCAGCAGCCACTCAACTATATTCTGGTCAATGTATCCCTGGGGGGCTTCATCTACTGCATCTTCTCTTTGTCGTCTTCATCACCAGCTGGCATGAATACTTTGTCTTCGGCCGCCATGTTTGTGCTCTGGAGGCCTTCCTGGGCTGTACAGCAGGTACTGCAGGAGAAGGGGGCTGGGGGGAGGCAAAGGACACCACTCCATGATTGGAACCAGGGGCCAGGCTGTCTGGTGACAGGCTGGTCACTGGCCTTCTTGGTCTTTGAGCGCTACATCATCATCTGTAAGCCCTTCGGCAACTTCCACTTCAGCTCCAAGCATGCACTGACGGTGGTCCTGGCCACCTGGACCATTGGTATTGGTGTCTCCATCCCACCCTTCTTTGGCTGGAGCTGGTTCGTCCCCGAGGGTCTTCAGTGTTCCTGCGGTCCCGACTGGTACACCGTGGGCACCAAATATTACAGCGAGTACTATACCTGGTTCCTCTTCATTTTCTGCTACATTGTGCCTCTCTCCCTCATCTGCTTCTCCTMCTCTCAGCTGCTGGGGGTCTTCAGAGCTGTGAGTGCCTTTCGTGAGGGTCAGGGAGGAAGGGATCACAAGGCTCTAGGTGAGAGGGAAGAGCGGGTTGCAGCTCAGCAGCAGGAGTCAGCTACAACCCAGAAAGCTGAGCGGGAGGTGAGCCACACAGTGGTGATGATGGTGGGATCCTTCTGTCTCTGTTGCACGCCCTATGCTGCCCTGGCCATGTATACAGTCAACAACCATAACCATGGGGTGGACTTACGGTTTGTCACCATTCCTGCCTTCTTCTCCAAGAGTGCTTGCGTCTACAATCCCATCATCTACTGCTTCATGAATAAGCAGTTCCGAGCTTGCATCATGGAGATGGTGTGTGGAAAGCCCATGACAGATGAGTCCGACATGTCTAGCTCCCAGAAAATAGAAGCTTCTACCGTCTCTTCTAGCCAAGTTGGCCCCAACTAA

Related Sequences

bmy_14118T0 Protein

Length: 394 aa      View alignments
>bmy_14118T0
MSKMSEEEEFFLFKNISLVGPWDGPQYHLTPVWVFHLQAAFMGFVFFVGTPLSATVLVARLRYRKLQQPLNYILVNVSLGGFIYCIFSLSSSSPAGMNTLSSAAMFVLWRPSWAVQQVLQEKGAGGRQRTPLHDWNQGPGCLVTGWSLAFLVFERYIIICKPFGNFHFSSKHALTVVLATWTIGIGVSIPPFFGWSWFVPEGLQCSCGPDWYTVGTKYYSEYYTWFLFIFCYIVPLSLICFSXSQLLGVFRAVSAFREGQGGRDHKALGEREERVAAQQQESATTQKAEREVSHTVVMMVGSFCLCCTPYAALAMYTVNNHNHGVDLRFVTIPAFFSKSACVYNPIIYCFMNKQFRACIMEMVCGKPMTDESDMSSSQKIEASTVSSSQVGPN*