Part of scaffold_931 (Scaffold)

For more information consult the page for scaffold_931 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LMX1A ENSTTRG00000003649 (Bottlenosed dolphin)

Gene Details

LIM homeobox transcription factor 1, alpha

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003419, Bottlenosed dolphin)

Protein Percentage 87.3%
cDNA percentage 90.08%
Ka/Ks Ratio 0.44957 (Ka = 0.0858, Ks = 0.1909)

LMX1A ENSBTAG00000012025 (Cow)

Gene Details

LIM homeobox transcription factor 1-alpha

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000015947, Cow)

Protein Percentage 85.71%
cDNA percentage 86.9%
Ka/Ks Ratio 0.24943 (Ka = 0.0923, Ks = 0.3702)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 759 bp    Location:176207..154899   Strand:-
>bmy_13961
ATGACACTTGACAAAGAGGCAGATCTGACCCCCATGCTTGAGATGGGAAAGAAAGGCCCTGAGAAACATGTTCCAACTTTGTGCCAAGCAAATTCATTTCACCCTGGCAAAAGTGATGATGAGGAAAGTCTTTGCAAGTCAGCCCATGGGGCAGGGAAAGGAGCCGCTGAGGATGGCAAGGACCAYAAGCGCCCTAAACGTCCCAGAACCATCTTGACAACCCAACAGAGGAGAGCATTCAAGGCCTCGTTTGAAGTATCCTCCAAGCCGTGCAGGAAGGTGAGGGAGACTCTGGCTGCAGAGACCGGGCTGAGCGTCCGTGTCGTTCAGGTGTGGTTCCAGAACCAGAGAGCTAAGATGAAGAAGCTGGCCCGGCGGCAGCAGCAACAACAGCAAGATCAACAGAACAGCCAGAGGCTGAGCTCCGCTCAGACAAATGGTGGCGGGAGCGCTGGGATGGAAGGGATCATGAACCCCTACACCGCTCTGCCCACCCCACAGCAGCTCCTGGCCATCGAGCAGAGCGTCTACAGCTCAGATCCCTTCCGACAGGGTCTCACCCCACCCCAGATGCCTGGAGACCACATGCACCCCTATGGTGCTGAGCCCCTTTTCCACGACCTGGATAGTGATGACACCTCTCTCAGTAACCTGGGTGACTGCTTCCTAGCAACCTCAGAAGCCGGGCCCCTGCAGTCCAGAGTGGGAAACCCCATTGACCACCTGTACTCCATGCAGAATTCTTACTTCACCTCTTGA

Related Sequences

bmy_13961T0 Protein

Length: 253 aa      View alignments
>bmy_13961T0
MTLDKEADLTPMLEMGKKGPEKHVPTLCQANSFHPGKSDDEESLCKSAHGAGKGAAEDGKDHKRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRQQQQQQDQQNSQRLSSAQTNGGGSAGMEGIMNPYTALPTPQQLLAIEQSVYSSDPFRQGLTPPQMPGDHMHPYGAEPLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS*