Part of scaffold_767 (Scaffold)

For more information consult the page for scaffold_767 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SHH ENSTTRG00000013721 (Bottlenosed dolphin)

Gene Details

sonic hedgehog

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013015, Bottlenosed dolphin)

Protein Percentage 87.0%
cDNA percentage 87.74%
Ka/Ks Ratio 0.19703 (Ka = 0.082, Ks = 0.416)

SHH ENSBTAG00000024552 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000034059, Cow)

Protein Percentage 87.07%
cDNA percentage 86.64%
Ka/Ks Ratio 0.15727 (Ka = 0.0795, Ks = 0.5054)

SHH  (Minke Whale)

Gene Details

sonic hedgehog

External Links

Gene match (Identifier: BACU000743, Minke Whale)

Protein Percentage 74.58%
cDNA percentage 79.1%
Ka/Ks Ratio 0.18594 (Ka = 0.1731, Ks = 0.9309)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 705 bp    Location:237327..231540   Strand:-
>bmy_12671
ATGGACGAGATGCTACTGCTGGCGAGATGTCTGCTGGTGGTGTTGGTCTCCTCACTGCTGATGTGCTCGGGGCTGGCGTGCGGACCCGGCCGGGGATTTGGGAAGAGGCGGAACCCAAAAAAACTGACCCCTTTAGCCTACAAGCAGTTCATCCCCAATGTGGCTGAGAAGACCCTAGGGGCCAGTGGAAGATATGAAGGGAAGATCACGAGAAACTCGGAGCGATTTAAGGAACTCACCCCCAATTACAACCCTGACATCATATTTAAGGATGAAGAAAACACTGGAGCGGACCGGCTGATGACTCAGCGGTGCAAGGACAAGTTGAACGCCTTAGCCATCTCCGTGATGAACCAGTGGCCAGGAGTGAAGCTGCGGGTGACAGAGGGCTGGGACGAAGACGGCCACCACTCGGAGGAGTCGCTGCACTACGAGGGCCGCGCCGTGGACATCACCACCTCGGACCGCGACCGCAGCAAGTACGGCATGCTGGCACGCCTGGCCGTGGAGGCCGGCTTCGACTGGGTCTACTACGAGTCCAAAGCGCACATCCACTGCTCGGTGAAAGCAGGTGAGGGGGCGGGCCCGCGGGCCCACCCATGCCGACAGCACCCCCCAGCAGCTCCAGATCTGCGCCCCAAAGCCTGGCTCACGGGCAAGAGGAAAGTGGGGAGGAGGGGGGCAGGCGGGGAGGGGATTGGGTGA

Related Sequences

bmy_12671T0 Protein

Length: 235 aa      View alignments
>bmy_12671T0
MDEMLLLARCLLVVLVSSLLMCSGLACGPGRGFGKRRNPKKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAGEGAGPRAHPCRQHPPAAPDLRPKAWLTGKRKVGRRGAGGEGIG*