Part of scaffold_95 (Scaffold)

For more information consult the page for scaffold_95 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SEMA4A ENSTTRG00000001397 (Bottlenosed dolphin)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001314, Bottlenosed dolphin)

Protein Percentage 97.11%
cDNA percentage 98.03%
Ka/Ks Ratio 0.30962 (Ka = 0.0123, Ks = 0.0397)

SEMA4A ENSBTAG00000012228 (Cow)

Gene Details

semaphorin-4A precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000016223, Cow)

Protein Percentage 90.29%
cDNA percentage 91.6%
Ka/Ks Ratio 0.23378 (Ka = 0.0518, Ks = 0.2217)

SEMA4A  (Minke Whale)

Gene Details

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A

External Links

Gene match (Identifier: BACU003945, Minke Whale)

Protein Percentage 98.56%
cDNA percentage 99.17%
Ka/Ks Ratio 0.40494 (Ka = 0.0055, Ks = 0.0136)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2289 bp    Location:1056302..1080713   Strand:+
>bmy_03406
ATGGCCCTTCCAGCCCTGGGCCTGGACTCCTGGAGCCTCCTGGGCCTTTTCCTCTTCCAGCTGCTCCTGCTGCTTCTGCCACCACCGACGACCGCACGGGGTGACGGGCAGGGGCCCACACCCAGGGTCAAATACTACGCAGGGGATGGACGCAGAGCTCTTAGCTTCTTCCATCAGAAGGGCCTCCAGGATTTTGACACTCTGCTCCTGAGTGGTGATGGAGACACTCTCTATGTGGGGGCTCGAGAGGCCATTCTGGCTTTGAATATCCAGGATCCAGGGGTACCAAGGCTGAAGAACATGATACCCTGGCCAGCCAGTGACCGAAAAAAGAGTGAATGTGCCTTTAAGAAGAAGAGCAATGAGACACAGTGTTTCAACTTTATTCGTGTCCTGGTCTCCTTCAATGCCACCCATCTCTACGCCTGTGGCACCTTCGCCTTCAGCCCTGCTTGTACCTTCATTGAACGCCAAGATTCCAACCTGTTGCCCATCTCGGAGGACAAGGTTGTAGAGGGGAAAGGCCAAAGCCCCTTCGACCCCGCCCATAAGCACACGGCTGTCCTGGCAGACGGGATGCTCTATTCCGGCACCATGAACAACTTCCTGGGCAGTGAGCCCATCCTGATGCGCACACTGGGATCCCAGCCTGTCCTCAAGACAGACAATTTCCTCCGCTGGCTGCAACCGGACGCCTCCTTCGTGGCAGCCATCCCTTCGACCCACGTCGTCTACTTCTTCTTCGAGGAGACAGCCAGCGAGTTTGAGTTCTTCGAGAAGCTCCACACATCCCGGGTGGCCAGAGTCTGCAAGAACGACGTGGGCGGCGAAAAGCTGCTGCAGAAGAAGTGGACCACCTTCTTGAAGGCCCAGCTACTCTGCGCCCAGCCGGGGCAGCTGCCCTTCAACGTCATCCGTCACGCTGTCCTGCTGGCAGACAATTCCTCCACCGATCCCTATGTCTACGCTGTCTTCACCTCTCAGTGGCAGGTTGGTGGGACCAGGAGCTCTGCTGTCTGTGCTTTCTCACTCAAGGACATCAAGCATGTCTTTGAGGGGAAGTATAAGGAATTGAACAAAGAGACTTCACGCTGGACTACTTACGGGTTCCCTGATATCAGTCCTCGGCCAGGCAGCTGCTCGGAGAGCCCCTCCTCTGATAAAGCCTTGACCTTCATGAAGGACCATTTCCTGATGGATGAGCCGGTGGTGGGGACACCCCTGCTGGTGAAGTCTGGTGTGGAGTACACACRGCTTGCGGTGGAGACAGCCCAGGGCATTGACRGGAATAGCCATCTGGTCATGTACCTGGGCACCAGCACAGGGTCCCTCCACAAGGCTGTGGTGAGTGGGGACAAGAACGCTTATCTGGTGGAGGAGATCCAGCTGTTCCCTGACCCTGAGCCTGTTCGCAACCTGCAGCTGGCCCCCACCCAGGGCGCAGTGTTTGCAGGCTTCTCAGGAGGCATCTGGAGGGTTCCCCGAGCCAACTGTAGTGTCTACGAGAGCTGTGTGGACTGTGTCCTTGCCCGGGACCCTCACTGTGCCTGGGACCCGGAGTCCCAAATCTGCCGCCTCCTGCCCACCACCATCCCGAAGTCCTGGAAGCAGGACATGGAGCGTGGGAACCCAGAGTGGGCATGTGCCAATGGCCCCGTGGACAGGAGCGGAAGGCCTCGGAGCAGCCCCCAAATCATTAAAGAAGTCCTGGCTGTCCCCAACTCCATCCTGGAGCTTCCCTGCCCCCATCTCTCAGCTCTGGCCTCTTACCACTGGAGTCACGGCACAGCAGCGATCCCGGACGTCTCTTCCACAGTCTACCGTGGCTCCCTCTTGCTGCTACTGCGAGATGGGGTGGGGGGTCTCTATCAGTGCTGGGCCACTGAGAATGACTTCTCATACCCTGTGGTCTCCTACTGGGTAGACAGTCAGGACCAACCCCTGGCCTTGGATCCTGAACTGGCGGGCATTCCCCGGGAACGCATGGAGGCCCCGCTGACCACAGTCGGTGGTGGGGCTGCCCTGGCTGCCCCGCGGTCCTACTGGCCCCACTTCCTCACCGTCACTGTACTCCTTGCCTTAGTGCTTTCAGGAGCCCTCATCCTCCTCCTCGCCTCCCCTTTGGGGGCACTCCGAGCCCGGGGCAAGGTCCAAGGCTGTGGGACCCTGCCCCTCGGGGAGAAGGCCCCATTGAGCAGGGAGCAGTGCCTCCAACCCCCCAAGGAATGCAGGACCTCTGCCAGTGATGTGGACGCCGACAACAACCTCCAGGGCACTGAGGTGGCTTAA

Related Sequences

bmy_03406T0 Protein

Length: 763 aa      View alignments
>bmy_03406T0
MALPALGLDSWSLLGLFLFQLLLLLLPPPTTARGDGQGPTPRVKYYAGDGRRALSFFHQKGLQDFDTLLLSGDGDTLYVGAREAILALNIQDPGVPRLKNMIPWPASDRKKSECAFKKKSNETQCFNFIRVLVSFNATHLYACGTFAFSPACTFIERQDSNLLPISEDKVVEGKGQSPFDPAHKHTAVLADGMLYSGTMNNFLGSEPILMRTLGSQPVLKTDNFLRWLQPDASFVAAIPSTHVVYFFFEETASEFEFFEKLHTSRVARVCKNDVGGEKLLQKKWTTFLKAQLLCAQPGQLPFNVIRHAVLLADNSSTDPYVYAVFTSQWQVGGTRSSAVCAFSLKDIKHVFEGKYKELNKETSRWTTYGFPDISPRPGSCSESPSSDKALTFMKDHFLMDEPVVGTPLLVKSGVEYTXLAVETAQGIDXNSHLVMYLGTSTGSLHKAVVSGDKNAYLVEEIQLFPDPEPVRNLQLAPTQGAVFAGFSGGIWRVPRANCSVYESCVDCVLARDPHCAWDPESQICRLLPTTIPKSWKQDMERGNPEWACANGPVDRSGRPRSSPQIIKEVLAVPNSILELPCPHLSALASYHWSHGTAAIPDVSSTVYRGSLLLLLRDGVGGLYQCWATENDFSYPVVSYWVDSQDQPLALDPELAGIPRERMEAPLTTVGGGAALAAPRSYWPHFLTVTVLLALVLSGALILLLASPLGALRARGKVQGCGTLPLGEKAPLSREQCLQPPKECRTSASDVDADNNLQGTEVA*