Sequence details bmy_03319 (Coding sequence)

Part of scaffold_96 (Scaffold)

For more information consult the page for scaffold_96 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TOPAZ1 ENSTTRG00000006307 (Bottlenosed dolphin)

Gene Details

testis and ovary specific PAZ domain containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005966, Bottlenosed dolphin)

Protein Percentage 93.86%
cDNA percentage 97.04%
Ka/Ks Ratio 0.71444 (Ka = 0.0265, Ks = 0.037)

C3ORF77 ENSBTAG00000044167 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000053356, Cow)

Protein Percentage 82.06%
cDNA percentage 89.67%
Ka/Ks Ratio 0.58449 (Ka = 0.0972, Ks = 0.1663)

TOPAZ1  (Minke Whale)

Gene Details

testis and ovary specific PAZ domain containing 1

External Links

Gene match (Identifier: BACU015679, Minke Whale)

Protein Percentage 14.5%
cDNA percentage 32.24%
Ka/Ks Ratio 0.16683 (Ka = 1.8544, Ks = 11.1153)

Additional orthologs identified in other species via the OPTIC pipeline.

TOPAZ1 (Human)  

Genome Location

Sequence Coding sequence

Length: 2871 bp    Location:1998494..2008928   Strand:+
Raw sequence 
>bmy_03319
ATGCTGCGGTCGCGGACCTCGGGGCCCGCGAGGGCCCCGGGGCGTGAAGGCGACGCGCGAGGCCCGAGGAAGAGAGGCAGGCGGCCTGGACCAGGCGAGGCGGGAGGCTGTGGCCCTGAGGCCGGGGGGCGCAAGGAGAGCAGGCAAAAGAGGAGGATGGTGGCCCGGGCGTCTGGGAGAGAAGAGGTGGAAAGTGACAAGTCGGGTGAGGCGTTTGGGGCCGGGAAGGCCTCAGCGAGGCGGCGAGTGGAGGGGCCGGGGGGCCAGGTGGGCTCTTCAGACCCTTCGGACCGGCCGGGCTTAGAAGCAGCGAAGGAGGCGGAGCTCCCCTTGCAATCGGGAAGACACACCAAGGAAAAAAGAAAAGTTACTGAAGCCTCAAGGGATGATCCACAGCCAGGGATTGACCTGGTAAGAAAGGAATCATTAACCAGTTCGGAATCTTTCCAAACAGTGGAATGCAGTGAATTTCAAAGTATGGCTTTCTTGCAGTCTTTGGGTAAGGAAGGTTTGGTAAAAAGTATTAAAAGAAGAATTCGAATTAAAAAATTTAAAAGCTTAGAACGCCCATCTCTCAAAATAACTGAAAATAAGGCTACACAAAATAGTAAGGTTGAATTCCAAGATGAACTGTACAAGAATACTCCAAAATATTCTTGTAACAGCTTGTCACCTGGAGTAGAAAATAATTCCATTTTAAAATTACATGATTGCAGTTGTTTCCCCCATTCCAAGGGTTGTAATGATGAAAATAACCTTGCGTATAAACCTGATGGTGGATGTATGCATGTACCAGAAAATTCCTCAGAGTTAAAGAAAGAAAGCCCTAGGAGTCTTGCAGATAAGAGTGACAGAAATAATATTCCTCAACTTTTACAAACTGAAGAAAACTTAATGGGAGTAAATCAGTTATTACTTGAAGAAAATGATTCATACCAAAGTAAAAATAAGGGCTTGCTTTCCTGCGTTCAAAGTGAAAAAAATAAACATTCATTAGAGGAGAGCAGTGTTGGGAGAAAACCCAGAAAAAGGATGAAGGTGTCTGAAAAAGGAGATGAAATGGTTATTAAGATGAAATTCTCTAATGTGTATAACAAATCTGAGCTGGTGTTACAAGAAAACAAAACAGGTGCTGAAGGTAAAGAAACAGAGACTTTAGTGGCTAAAAAAAGTCCTTTAAAAGTTTTGAGAAAAGTAARCAATAACACGCTGTCACCAGTGGATCATTTATTAAGTCTTCCAGAAACAGGGAAAAAAACAAGTCATGAACACCATGTAAATCCTATGTTTCAGAAAACTCTTGAGCCACTTTCAAAAGAAGAAAAAAAGAATGCTTCAGAGCCTTTAGGATGTAAGAGCATGGATCCAGAGGAGTATTTTAAGTGGATGAAAAACTCAATAGTGAAGTCACCTAGCGATTGCCATCCTATTGAAAAGAGAGCTTCGAGGGAAGACTCGAAGAATGAAGCTGAAGAATCWAAATTTAGCTGTCACAGAACAATACCAATGACTGGCAAAAGAACTTGGCCTTGTTATTCATGTGCTAGAATATCTGCCCAGTGTTGGAAAAAGACTTCCTTGCCACAGTCAAATAACTTTCTTCCTGGGTCTCAGGAAAGTTTTAGGCAAGATGATTTTCTTAAACACCAAACAAATCAAACTCACTTAACTGACTCCRAATTGATGCTACAAAGTTCTCTAACAGAAACAAGCAGTGAATCTTCAAGTAGAGAGAAATTGGATTCTAATTTAAGTTGTTTATCTTCAGTCTCTACAGTGGAACCTACTTTAATGGTTATAAAGGAACCTATCATCAATGATAATAAAAAAATGAAGTCAGAGAAACTAAGCAGAAGTGCGTCAGAGGTAGTTTCTAATACTACTGAAGATACTCCATTAACTAATGTGACTCAAAACTTAACAGGAAGTAAAAAAAAAGATAGAGGGAATTTAACAAAACTGAATTTGACAGTGGCTTCCCAGGATGGCCAGGAAGCAAATAGCTCTACAGGCAAAACTATTCATCGAAAAGCATGCATTGCTAAGCAAACACTGGTTGTTCCAGACTTCGTTAAGATGTTGAACACAGGACGGCTGACTAATTTTAAAATTCCCTTACTTAAGAACAAAACAGAAAAAAGAAAAGAAATAAATGCCAAGTCATCAGAGAGAGAAGTATATAGTCCCCTAGAACTTCTTGACAGTTTATCTGGAGCAGAGGTAAGGCAGAATAGGACTAAAGAAAATGTCACCACAGTAACTTCAGGACCTCAATCTTTGAGCATACAAAGTAGTGTAATTCCAGTGCAAGCTGGTTCTGACTCATACTGCAGTAAGAATTCCTGTATTATTTCTCCAAGCTTTTTAAAGCAAGGTAATAGTAATAAACCATCTAACCACATCTCTGAACCAGGCAATATTGTTTCTAATAAGGAAGCTGTTTCTTTCACAGTTGAAAATAATACTATTTCTTGTGATCCTGGGTGTATAAAGAAAAGTCCTGCMTTCTGCTCTAGTGAACAAGAAACATTCAAAGCAGTTTCCGCTGAAGTTAGTGGTAGAAAAATGACTAAGAACTTTTCAGAAATTGAAGTGGGGTTTCCAGATATTCTTAAAGCGTATGAAGATGATGTCCTCTTAATTGATGTAATTCAAGATGACCCAGACCTCTTTGGAGTCTCCAATGAAGGGGAGCTGTCTTTTACTTCCGAGGTTCCCATGATAAGCCAGGAGCCCAGTGTTGCCGAAGAGCACCAGTCAACAGACTCCAAGCACATGGAACTTCCAGAAAAAAAAGAACCAAGTGATGACTTGAGGATAATGGCTGATTTTATAAAAATGATACGTGTTCATTATATTAAAAGTGAATAA

Related Sequences

bmy_03319T0 Protein

Length: 957 aa      View alignments
>bmy_03319T0
MLRSRTSGPARAPGREGDARGPRKRGRRPGPGEAGGCGPEAGGRKESRQKRRMVARASGREEVESDKSGEAFGAGKASARRRVEGPGGQVGSSDPSDRPGLEAAKEAELPLQSGRHTKEKRKVTEASRDDPQPGIDLVRKESLTSSESFQTVECSEFQSMAFLQSLGKEGLVKSIKRRIRIKKFKSLERPSLKITENKATQNSKVEFQDELYKNTPKYSCNSLSPGVENNSILKLHDCSCFPHSKGCNDENNLAYKPDGGCMHVPENSSELKKESPRSLADKSDRNNIPQLLQTEENLMGVNQLLLEENDSYQSKNKGLLSCVQSEKNKHSLEESSVGRKPRKRMKVSEKGDEMVIKMKFSNVYNKSELVLQENKTGAEGKETETLVAKKSPLKVLRKVXNNTLSPVDHLLSLPETGKKTSHEHHVNPMFQKTLEPLSKEEKKNASEPLGCKSMDPEEYFKWMKNSIVKSPSDCHPIEKRASREDSKNEAEESKFSCHRTIPMTGKRTWPCYSCARISAQCWKKTSLPQSNNFLPGSQESFRQDDFLKHQTNQTHLTDSXLMLQSSLTETSSESSSREKLDSNLSCLSSVSTVEPTLMVIKEPIINDNKKMKSEKLSRSASEVVSNTTEDTPLTNVTQNLTGSKKKDRGNLTKLNLTVASQDGQEANSSTGKTIHRKACIAKQTLVVPDFVKMLNTGRLTNFKIPLLKNKTEKRKEINAKSSEREVYSPLELLDSLSGAEVRQNRTKENVTTVTSGPQSLSIQSSVIPVQAGSDSYCSKNSCIISPSFLKQGNSNKPSNHISEPGNIVSNKEAVSFTVENNTISCDPGCIKKSPAFCSSEQETFKAVSAEVSGRKMTKNFSEIEVGFPDILKAYEDDVLLIDVIQDDPDLFGVSNEGELSFTSEVPMISQEPSVAEEHQSTDSKHMELPEKKEPSDDLRIMADFIKMIRVHYIKSE*