KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:03 2014 Check: 00 .. Name: ENSP00000310303/1-1692 Len: 1834 Check: 9593 Weight: 1.00 Name: ENSBTAP00000053356/1-1704 Len: 1834 Check: 6209 Weight: 1.00 Name: BACU015679/1-857 Len: 1834 Check: 4871 Weight: 1.00 Name: bmy_03319T0/1-956 Len: 1834 Check: 8191 Weight: 1.00 Name: ENSTTRP00000005966/1-586 Len: 1834 Check: 1088 Weight: 1.00 // 1 50 ENSP00000310303/1-1692 MRRPPPLGPT TASGPEGNVR NLQKR-QAPG PGAAGGCGPE AGGCRENKQK ENSBTAP00000053356/1-1704 MPRAPPSGPT TAPGREDDAR GLRKRSRRPG LGEAGGCGPE AEGLEESRQK BACU015679/1-857 ---------- MKVSEKGDEM VIKMK----- ---------- ---FSNVYNK bmy_03319T0/1-956 MLRSRTSGPA RAPGREGDAR GPRKRGRRPG PGEAGGCGPE AGGRKESRQK ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000310303/1-1692 RRMVARATPG RGEVESDKSV AASGA-GK-A ARRQVEGRRG PVSPSDSSDP ENSBTAP00000053356/1-1704 RRMVARAS-G REEVESDKSG EASG-----T ARRRAEGLGG RGGLSDPSDR BACU015679/1-857 SELVLQENRT GAEVENNTIS CDPGCIKKSP AFCSSEQETF KAVSFEVSGR bmy_03319T0/1-956 RRMVARAS-G REEVESDKSG EAFGA-GKAS ARRRVEGPGG QVGSSDPSDR ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000310303/1-1692 RGLEAAKEAE LPLQTE---R HTKEKRKVTE ASSDDPQPGL DLVRKESLTS ENSBTAP00000053356/1-1704 STLEAAKEAE LPLQAGGRRK SAKEKRKVTE ASSDDPQPGI DLVRKESLTS BACU015679/1-857 KMTKNFSEVE VGFPDI--LK AYEDDVLLID VIQDDPD--- ---------- bmy_03319T0/1-956 PGLEAAKEAE LPLQSG---R HTKEKRKVTE ASRDDPQPGI DLVRKESLTS ENSTTRP00000005966/1-586 ---------- ---------- --KEKRKVTE ASSDDPQPGI DLVRKESLTS 151 200 ENSP00000310303/1-1692 SESFQTVEC- -------LQS LGKESIIEGI KRRIRNKKLK SLENPPLKIT ENSBTAP00000053356/1-1704 SESFPTVECS EFQSMAFLQS LGKERLVEGI KRRIRIKKCK SLESPALKMT BACU015679/1-857 ---------- -------LFG VSNEGELS-- ----FTSEVP MISQEPSVAE bmy_03319T0/1-956 SESFQTVECS EFQSMAFLQS LGKEGLVKSI KRRIRIKKFK SLERPSLKIT ENSTTRP00000005966/1-586 SESFQTVEC- -------LQS LGKESLVKGI KRRIRIKKFK SLERPPLKIT 201 250 ENSP00000310303/1-1692 ENEATQNIKV EFQDELYKNT PKYSCNILSP EVENNSVLKL RDCNCFPHSK ENSBTAP00000053356/1-1704 ENKATQNSKV EFQDELYKNT LKYSCNSLSP GVENNSVLKL HDCSCLSHSK BACU015679/1-857 EHQSTDSKHM ELPEKKEPSD DLRQLPVLDP ESMKSEI--- --CASLSAAS bmy_03319T0/1-956 ENKATQNSKV EFQDELYKNT PKYSCNSLSP GVENNSILKL HDCSCFPHSK ENSTTRP00000005966/1-586 EYKATQNSKV EFQDELYKNT PKYSCHSLSP GVENNCILRL RDCSCFPHSK 251 300 ENSP00000310303/1-1692 GCNDENNLPY KPDGGCMHVA ENFSK--KEN LRSLAEKSDT NSIPQL---- ENSBTAP00000053356/1-1704 DCNDENNLAY KPDGGCMHVP ENSSKSKKEN PRSLIDKTDP SNIPQL---- BACU015679/1-857 EIKHDSK--- ---GANISLG EVANE--TSS NEKLGDVSEH TKSSDLDEKV bmy_03319T0/1-956 GCNDENNLAY KPDGGCMHVP ENSSELKKES PRSLADKSDR NNIPQL---- ENSTTRP00000005966/1-586 SCNDENNLAY KLDGGYMHVP ENSSELKKEN PRSLGDKSDT NNIPQH---- 301 350 ENSP00000310303/1-1692 -LQTEENVMG VNKLLPEESD L------YQS KTNG------ ----LLSCLQ ENSBTAP00000053356/1-1704 -LQTEENVMR VSQLLLEEND S------YLS KNNG------ ----LFSCLQ BACU015679/1-857 CMDVFKKYIS INELCLLQRA VNMFMAYYRK FPPGIHFDLQ VLNDLLNSLL bmy_03319T0/1-956 -LQTEENLMG VNQLLLEEND S------YQS KNKG------ ----LLSCVQ ENSTTRP00000005966/1-586 -LQTEENLMG VNQLLLEEND S------YQS KNKG------ ----LLSCLQ 351 400 ENSP00000310303/1-1692 HE---KNKYS IEESSVGRKP RKRMKLSEKA DETVTEMNFS N-------EY ENSBTAP00000053356/1-1704 SE---KTKHS IEESSIGRKS RKRMKVSEKG NGMVIEMKFS N-------MC BACU015679/1-857 THCLLKEVFQ VMSLSIMVKM LPALKILLKT FECVATMKLR NAVPALIDIF bmy_03319T0/1-956 SE---KNKHS LEESSVGRKP RKRMKVSEKG DEMVIKMKFS N-------VY ENSTTRP00000005966/1-586 SE---KNKHS LEESSVGRKP RKRMKVSEKG DEMVIKMKFS N-------VY 401 450 ENSP00000310303/1-1692 NK---SELML QEN------- ---QMIADGK EAET----KS PLNVLRKVSH ENSBTAP00000053356/1-1704 NK---SELML QGN------- ---QTGADGK ETEILEAKKS SLKVLRKVNN BACU015679/1-857 CKLVEAGMVL DPEHFNYIIK LLYQVQASKQ EITAVLEMKS RLQ-MRQFIK bmy_03319T0/1-956 NK---SELVL QEN------- ---KTGAEGK ETETLVAKKS PLKVLRKVXN ENSTTRP00000005966/1-586 NK---YELVL QEN------- ---KTGAEGK ETETLEAKKS PLEVLRKVNN 451 500 ENSP00000310303/1-1692 NTVSLMDHLL SVPETVEKET SSEHHVNAVF QKTIEPLLKE ETENASEPLG ENSBTAP00000053356/1-1704 NTLSPMDPLL SLPET-GKKT SPEHCANAVF QKALEQLSKE ETKNVSQPLG BACU015679/1-857 NWKCDLESAL NEIEH-YKEK GDWTKLGNLY INI------- -------KLG bmy_03319T0/1-956 NTLSPVDHLL SLPET-GKKT SHEHHVNPMF QKTLEPLSKE EKKNASEPLG ENSTTRP00000005966/1-586 NTLSPMDHLL SLPET-GEKT SHEHHVNPMF QKTLEPLSKE EKKNASEPLG 501 550 ENSP00000310303/1-1692 YESM-ASKED FKSMKSFIGK SPNEYH---- ---IERRSSR EDLRSASEEL ENSBTAP00000053356/1-1704 CTSMDPPEDY FKSMKNSLVK SLSDCFP--- ---IEKRSSR ESLKNEAEES BACU015679/1-857 CEKFADFQRF CACIAETLTK DCKDERPGVP FCEFAETVSK DPQNSEVDKT bmy_03319T0/1-956 CKSM-DPEEY FKWMKNSIVK SPSDCHP--- ---IEKRASR EDSKNEAEES ENSTTRP00000005966/1-586 CKRM-DPEEY FKWMKNSIVK SPSDCHP--- ---IEKRASR EDSKNEAEES 551 600 ENSP00000310303/1-1692 ---------K LSCQRTIPMT -GKRTW---- ---------- ---------P ENSBTAP00000053356/1-1704 ---------K YSCQRTIPMT -GKRTW---- ---------- ---------P BACU015679/1-857 LLGRIGISAM YFYHKLLQWS KGRKVLDKLY ELKIHFTSLK GLIGPEKLAP bmy_03319T0/1-956 ---------K FSCHRTIPMT -GKRTW---- ---------- ---------P ENSTTRP00000005966/1-586 ---------K FSCQRTIPMT -GKRTW---- ---------- ---------P 601 650 ENSP00000310303/1-1692 YYSCARISAW CW-KKASLPE SSYFLRGSQE SCRQVDVPKH QTNQTHLTDS ENSBTAP00000053356/1-1704 CYSCARISAQ CW-KKASLPQ SS-------- --RQDDFLKH QMNQTHLTDS BACU015679/1-857 RCQIVNIAAE IFLKSGSLDG AVWVLRGAL- -----SLGCY PPLEGNLYRK bmy_03319T0/1-956 CYSCARISAQ CW-KKTSLPQ SNNFLPGSQE SFRQDDFLKH QTNQTHLTDS ENSTTRP00000005966/1-586 CYSCARISAQ CW-KKASLPQ SNNFLPGSQE SFRQDDFLKH QTNQTHLTDS 651 700 ENSP00000310303/1-1692 KLLLQSSLTE TNTESSSKEK LDSNSNCLSS VSAVEPTLMV IKEPIIKDDK ENSBTAP00000053356/1-1704 KLMLQSSVTE TNSASSSIEK LDSNLNCLPS VSTVEPTSVV IKEPIVNDDE BACU015679/1-857 LLLIPSYLSE IEMLLSIELF MVSNASSIQS PGTSTQMLQI VLKRCEENKS bmy_03319T0/1-956 XLMLQSSLTE TSSESSSREK LDSNLSCLSS VSTVEPTLMV IKEPIINDNK ENSTTRP00000005966/1-586 KLMLQSSLTE TRSESSSREK LDSNLNCLSS VSTVEPTLMV IKEPIINDNK 701 750 ENSP00000310303/1-1692 KIKSEELSRR GSEVISNTTE DTQL--TSET QSLTGNKKKA RGNLTKLNLT ENSBTAP00000053356/1-1704 KMKSEELSRS ASEVVSNTTE DTSL--TNMT HNLTGSKKKD RGNLTKLNLT BACU015679/1-857 RSKDDYQAAV ERLIMAARIS DPKLFIKHMT VNVNTEQEVN ENSLKRLSAY bmy_03319T0/1-956 KMKSEKLSRS ASEVVSNTTE DTPL--TNVT QNLTGSKKKD RGNLTKLNLT ENSTTRP00000005966/1-586 KTKSEKLSRS ASEIVSNTVE DTPL--ANVT QNLTGSKKKD RGNLTKLNLT 751 800 ENSP00000310303/1-1692 A--------- ---------- ------TSKD GQEANNSAGK TIHRKACIAQ ENSBTAP00000053356/1-1704 V--------- ---------- ------ASQD GQEANNSTSK TVHRKACITK BACU015679/1-857 LENLQKPGFK SLKPTQLMFY VRETDQNSSD GQEHFSTSGF RAVKFTLHTR bmy_03319T0/1-956 V--------- ---------- ------ASQD GQEANSSTGK TIHRKACIAK ENSTTRP00000005966/1-586 V--------- ---------- ------ASQD GQEANSSTGK TIHRKACIAK 801 850 ENSP00000310303/1-1692 QTFIVPDLVK ILNTGRLTNF KIPLLKNKSE KRKEVNAKSS EREAYSPLEL ENSBTAP00000053356/1-1704 QALVVPDLVK ILNTGRLTNF KIPLLKNKTE KRKEINAKSS EREVYSPLEL BACU015679/1-857 D--LLSTVLY ILNSCSLSIE HIQSLNSNVH SQ-------- ------PLKE bmy_03319T0/1-956 QTLVVPDFVK MLNTGRLTNF KIPLLKNKTE KRKEINAKSS EREVYSPLEL ENSTTRP00000005966/1-586 QTLVVPDLIK ILNTGRLTNF KIPLLKNKT- ---------- ---------- 851 900 ENSP00000310303/1-1692 LDNLSGADVR QNRSKENVSM MMLGPQTLSI RNSVTPVQAS SDSFYNKKSY ENSBTAP00000053356/1-1704 LDSVSGAEVR QSRTKENAVT VTSGPQSLSI QRSVIPVQAS SDSFCSKNSC BACU015679/1-857 AKRISDRPIK WDKSYYSFTG FKDPDEDL-- -EQVWRMETT LTSWLDNNG- bmy_03319T0/1-956 LDSLSGAEVR QNRTKENVTT VTSGPQSLSI QSSVIPVQAG SDSYCSKNSC ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000310303/1-1692 SISPSFTKQG NNSKPSNHVS EPGNIVSNKE VASLTVENNA FSCDPGYVEK ENSBTAP00000053356/1-1704 IIAPSFLKQG NNKQPSNHIS ASGRIISNNA AGSLTVENNT FSCDPGCIEK BACU015679/1-857 ---------- ---------- ---------- ---------- ---------- bmy_03319T0/1-956 IISPSFLKQG NSNKPSNHIS EPGNIVSNKE AVSFTVENNT ISCDPGCIKK ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000310303/1-1692 SPSFCCNEQE TFRPVSSEVR GRKITKNFSE --VGFPDILK AYEDDVLLID ENSBTAP00000053356/1-1704 NPTFYSNEQE PFKAVSSEVS GRKMTENFSE IKVGFPDILK AYEDDVLLID BACU015679/1-857 --------KS AVKKLKNSLP LRKELDRLKD ---------- ---------- bmy_03319T0/1-956 SPAFCSSEQE TFKAVSAEVS GRKMTKNFSE IEVGFPDILK AYEDDVLLID ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000310303/1-1692 VIQDDPDLFG VSNEGELSFT SEVPKISQ-- EPNVAGEHQS TDSKYMETPV ENSBTAP00000053356/1-1704 VIQDDPDLFG VSNEGELSFP SEVPMISQ-- EPNVAEEHQS TDSKHMELPD BACU015679/1-857 ---------- -----ELSHQ LQLSDISDRY APSLHE---- --LGHFNIPI bmy_03319T0/1-956 VIQDDPDLFG VSNEGELSFT SEVPMISQ-- EPSVAEEHQS TDSKHMELPE ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000310303/1-1692 KKEPSDDLRE LPVLDCGWIK PDICASNSAE SEIKRDPKDV NTSLGEVANE ENSBTAP00000053356/1-1704 KKEPSNALRE LPVPDPGSMK SEICASLSAA SEIKHDSKDA NISLGEVTHE BACU015679/1-857 LCDPANLQ-- ---------- ---------- ---------- ---------- bmy_03319T0/1-956 KKEPSDDL-- ---------- ---------- ---------- ---------- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000310303/1-1692 TSENETLGDF SEQIKGSDLD EKHRFTDKVI TKEEKENIYE VCKS---KDS ENSBTAP00000053356/1-1704 TSSNEKPRGL SEQTKSSDLD EKCRFSDKVA IREEKETISE VCRSSHNRDS BACU015679/1-857 ---------- ---------- ---------- ---------- ---------- bmy_03319T0/1-956 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000310303/1-1692 RNADFMVGEC QFAVPVPKPL CLLV--PPLN LSGRQEDTIL NTWMNDFRFL ENSBTAP00000053356/1-1704 KNTEIMVGEC HLAALVSKPL CLPVPLPPLN LNAHQEDTLL NPQMNDFRLP BACU015679/1-857 ---------- ---------- ---------- ---------- ---------- bmy_03319T0/1-956 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000310303/1-1692 GKHSVLKLQN PETCEIFKRE KNVGVFQKSL GLMIPYKYCK FHFNTLRGCE ENSBTAP00000053356/1-1704 GKHSVLKLQN PEICEIFKRE KNVGVFQKPL GLMIPHRYCK FHFNTLRGCE BACU015679/1-857 ---------- ---------- ---------- ---------- ---------- bmy_03319T0/1-956 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000310303/1-1692 RPLCKFAHVP EQGDEKVCMD VFKKYININE LCLLQRAVNI FMEYYRKFPP ENSBTAP00000053356/1-1704 RSQCKFGHVP EQGDEKVCMD VFKKYISINE LCLLQRAANM FMEYYRKFLP BACU015679/1-857 ---------- ---------- ---------- ---------- ---------- bmy_03319T0/1-956 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000310303/1-1692 GVYFDLQVLN DLLNSLLKHC LLKEVFQIVN LSIMVKMLPS LKILLNIFEY ENSBTAP00000053356/1-1704 GIHFDLQVLN DLLSSLLKHC LLKEVFQVMN LCIMIKMLPA LKILLKIFEY BACU015679/1-857 ---------- ---------- ---------- ---------- ---------- bmy_03319T0/1-956 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000310303/1-1692 VATMKLRNAV PALIDIFCKL VEAGMVLDPE HFNYIVKLLY QVQASKQEIT ENSBTAP00000053356/1-1704 VATMKLRNAV PALINIFCKL LEAGMVLDPE HFNYIVKLLY QVQASKQEIT BACU015679/1-857 ---------- ---------- ---------- ---------- ---------- bmy_03319T0/1-956 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSP00000310303/1-1692 AVLEMKSRLQ MRRFKKNWKC DLDSALNKLE HCKEKGDWTK LGKLYINVKM ENSBTAP00000053356/1-1704 AVLEMKSRLH MRQFKKNWKC DLEAALNEIE HCKEKGDWTK LGNVYLNIKM BACU015679/1-857 ---------- ---------- ---------- ---------- ---------- bmy_03319T0/1-956 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSP00000310303/1-1692 GCEKFADFQT FCACIAETLT KNYEDERPDI PFCEFAETVS KDPQNSKVDK ENSBTAP00000053356/1-1704 SCEKFADFQR FCACIAETLT KDCKEERPGV PFCEFAETVS KDLQNSEVDK BACU015679/1-857 ---------- ---------- ---------- ---------- ---------- bmy_03319T0/1-956 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSP00000310303/1-1692 GVLGRIGISA MYFYHKLLQW SKGRKVLEKL YELKIHFTSL KGLIGPEKLA ENSBTAP00000053356/1-1704 TLLGRIGISA MYFYHKLLQW SKGRKVLDKL YELKIHFTSL KGLIGPEKLA BACU015679/1-857 ---------- ---------- ---------- ---------- ---------- bmy_03319T0/1-956 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSP00000310303/1-1692 SRCQIVNVAA EIFLKSGSLD GAIWVMRESE WIINTPLWPC DRLDVLNRHN ENSBTAP00000053356/1-1704 PRCQIVNIAA EIFLKSGSLD GAIWVLRESE WIINTPVWPC DRLDVLNRHN BACU015679/1-857 ---------- ---------- ---------- WFILTRV--- ---------- bmy_03319T0/1-956 ---------- ---------- ---------- RIMADFI--- ---------- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSP00000310303/1-1692 LLCTIAHEIL AKSLYRQTFE VLQNLPGFQN SQETVEVSQY SLLFNKLLGS ENSBTAP00000053356/1-1704 LLCTIAHEIL AKSLYRQTFE VLQNLPGFQN SQETVEVSQY SLLFNKLLDA BACU015679/1-857 ---------- ---------- ---------- ---------- ---------- bmy_03319T0/1-956 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1651 1700 ENSP00000310303/1-1692 CIESSSLGMS SSVAEFMISK SIPIDFSFLR RLITSLGRSR LWLKARAHYK ENSBTAP00000053356/1-1704 CIESNSLGMS SSVAEFMISK SIPIDFSFLR RLITSLGRSC LWLKARAHYK BACU015679/1-857 ---------- ---------- ---------- ---------- ---------- bmy_03319T0/1-956 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1701 1750 ENSP00000310303/1-1692 SALSLGCYPP LEGNLYRKLL LIPSYLSEIE MLLAIEIFMV SNASSIQSPG ENSBTAP00000053356/1-1704 SALSLGCYPP LEGNLYRKLL LIPSYLSEIE MLLAIEIFLV SNASSIQSPG BACU015679/1-857 ---------- ---------- ---------- ---------- ---------- bmy_03319T0/1-956 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1751 1800 ENSP00000310303/1-1692 TSTQILQIVL KRCEDNQSRS NDDYQAAVER LIMAARISDP KLFVKHMTVN ENSBTAP00000053356/1-1704 TSTQMLQIVL KRSEENKSRS KDDYQAAVER LITAARISDP KLFIKHMTVN BACU015679/1-857 ---QQARENM KRKEE----- ---------- ---------- ---------- bmy_03319T0/1-956 ---KMIRVHY IKSE------ ---------- ---------- ---------- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ---------- ---------- 1801 1850 ENSP00000310303/1-1692 VNKEQVYSLE HCSALKWLKE NMKWAGKVWL FSNH ENSBTAP00000053356/1-1704 VNKEQVYSLE QCSALKWLKE NMKWAGKVWL FNNH BACU015679/1-857 ---------- ---------- ---------- ---- bmy_03319T0/1-956 ---------- ---------- ---------- ---- ENSTTRP00000005966/1-586 ---------- ---------- ---------- ----