Part of scaffold_88 (Scaffold)

For more information consult the page for scaffold_88 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

POP4 ENSTTRG00000005882 (Bottlenosed dolphin)

Gene Details

processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005556, Bottlenosed dolphin)

Protein Percentage 92.27%
cDNA percentage 95.0%
Ka/Ks Ratio 1.21508 (Ka = 0.0547, Ks = 0.045)

POP4 ENSBTAG00000002223 (Cow)

Gene Details

Ribonuclease P protein subunit p29

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000002876, Cow)

Protein Percentage 89.01%
cDNA percentage 89.38%
Ka/Ks Ratio 0.29686 (Ka = 0.0752, Ks = 0.2532)

POP4  (Minke Whale)

Gene Details

processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae)

External Links

Gene match (Identifier: BACU000548, Minke Whale)

Protein Percentage 91.36%
cDNA percentage 94.7%
Ka/Ks Ratio 1.88359 (Ka = 0.062, Ks = 0.0329)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 747 bp    Location:229372..239596   Strand:+
>bmy_03031
ATGAACAGTGTGATCTACCATGCCTTTTCTCAGAAAGAGGCAAAAGAGTTCGACATTCAGCACCCAGGAACCCAGCGGGCCGAGGCCTTTGTGAGGGCCTTCCTGAAGCGGAGCATGCCCCGCATGAGCCAACAAGCCCAGGAGGACCACCTGCAACGCAAGGCCGTTGTTCTGGAGTACTTCACTCACCGGAAGCAGAAGGAAAAGAAAAAGAAATCTAAAGGCCTCTCTGCCAAGCAGAGGAGGGAGCTGCGGCTCTTTGACATTAATCCAGAGCAACAGAGATACAGTCTTTTTCTCCCTCTACATGAACTCTGGAAACAGTACATCCGGGATCTGTGCAATGGTCTCAAACCAGACATGCAGCCACAGATGATTCAGGCCAAGCTTTTAAAGGCAGATCTTCACGGCGCTATTGTTTCAGTTACAAAATCCAAATGCCCCTCCTATGTGGGCATTACAGGAATCCTTCTACAGGAAACAAAGCACATTTTCAAAATTATCACTAAAGAAGACCGCCTGAAAGTTATCCCCAAGCTAAACTGTGTGTTCACTGTGGAGATCGATGGCTTTATTTCCTACATTTATGGGAGCAAATTCCAGCTGCGGTCAAAGAAGCAGCAATGCCAGAGGCTTCACTGTGTCAGCATTTTGCGCTCAGACTCCACACTGGACGAGAAACACCACAGTGGAGGGGAGAGCGTAAACACTGACTTCACATTATTGGAGGAGAGCAAGAAGACCTAG

Related Sequences

bmy_03031T0 Protein

Length: 249 aa      View alignments
>bmy_03031T0
MNSVIYHAFSQKEAKEFDIQHPGTQRAEAFVRAFLKRSMPRMSQQAQEDHLQRKAVVLEYFTHRKQKEKKKKSKGLSAKQRRELRLFDINPEQQRYSLFLPLHELWKQYIRDLCNGLKPDMQPQMIQAKLLKADLHGAIVSVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVFTVEIDGFISYIYGSKFQLRSKKQQCQRLHCVSILRSDSTLDEKHHSGGESVNTDFTLLEESKKT*