Sequence detailsbmy_01517 (Coding sequence)

Part of scaffold_36 (SequenceType object (1))

For more information consult the page for scaffold_36 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LINGO1ENSTTRG00000010110 (Bottlenosed dolphin)

Gene Details

leucine rich repeat and Ig domain containing 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000009583, Bottlenosed dolphin)

Protein Percentage 84.4%
cDNA percentage 84.16%
Ka/Ks Ratio 0.10223 (Ka = 0.01, Ks = 0.098)

LINGO1ENSBTAG00000023147 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000043683, Cow)

Protein Percentage 98.58%
cDNA percentage 95.11%
Ka/Ks Ratio 0.01362 (Ka = 0.0075, Ks = 0.5495)

LINGO1 (Minke Whale)

Gene Details

leucine rich repeat and Ig domain containing 1

External Links

Gene match (Identifier: BACU017880, Minke Whale)

Protein Percentage 98.8%
cDNA percentage 97.83%
Ka/Ks Ratio 0.06421 (Ka = 0.0068, Ks = 0.1065)

Additional orthologs identified in other species via the OPTIC pipeline.

LINGO1 (Human)   Lingo1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1272 bp    Location:1041114..1043235   Strand:+
Raw sequence 
>bmy_01517
ATGCTGGCGGGGGGCGTGAGGAGCATGCCCAGCCCCCTCCTGGCCTGCTGGCAGCCCATCCTCCTGCTGGTACTGGGCTCGGTGCTGTCAGGCTCAGCCACAGGCTGCCCGCCCCGCTGCGAGTGCTCTGCCCAGGACCGCGCAGTGCTCTGCCACCGCAAGCGCTTTGTGGCGGTGCCTGAGGGCATCCCCACTGAGACCCGCCTGCTGGACCTGGGCAAGAACCGCATCAAAACGCTCAACCAGGACGAGTTTGCCAGCTTCCCGCACCTGGAGGAGCTGGAGCTCAATGAGAACATCGTGAGCGCTGTGGAGCCTGGCGCCTTCAACAACCTCTTCAACCTCCGGACGCTGGGGCTCCGCAGCAACCGCCTGAAGCTCATCCCCCTGGGCGTCTTCACCGGCCTCAGTAACCTGACCAAGCTGGACATCAGCGAGAACAAGATCGTCATCCTGCTGGACTACATGTTCCAGGACCTGTACAACCTSAAGTCACTGGAAGTCGGYGACAACGACCTCGTCTACATCTCCCACCGAGCCTTCAGCGGCCTCAACAGCCTGGAGCAGCTGACGCTGGAGAAATGCAACCTGACCTCCATCCCCACTGAGGCGCTGTCCCACCTGCACGGTCTCATCGTCCTGCGGCTCCGGCACCTCAACATCAATGCCATCCGGGACTATTCCTTCAAGAGGTTGTACCGGCTCAAGGTCTTGGAGATCTCTCACTGGCCCTACTTGGACACCATGACTCCCAACTGTCTCTACGGCCTCAACCTGACGTCCCTGTCTATCACGCACTGCAACCTGACCGCTGTGCCCTACCTGGCGGTGCGCCACCTGGTCTATCTCCGGTTCCTCAACCTCTCCTACAACCCCATCAGCACCATTGAGGGCTCCATGTTGCACGAGCTGCTAAGGCTGCAGGAGATCCAGCTGGTGGGTGGGCAGCTGGCCGTGGTGGAGCCCTACGCCTTCCGCGGCCTCAACTACCTGCGCGTGCTCAATGTCTCCGGCAACCAGCTGACCACACTGGAGGAGTCGGCCTTCCACTCGGTGGGCAACCTGGAGACGCTCATCCTGGACTCCAACCCGCTGGCCTGCGACTGCCGGCTCCTGTGGGTGTTCCGGCGCCGCTGGCGGCTCAACTTCAACCGGCAGCAGCCCACGTGTGCCACGCCCGAGTTCGTCCAGGGCAAGGAGTTCAAGGACTTCCCTGATGTGCTCCTGCCCAACTACTTCACCTGCCGCCCTAGTCGGAATGCAAACTTTTGA

Related Sequences

bmy_01517T0 SequenceType object (3)

Length: 424 aa      View alignments
>bmy_01517T0
MLAGGVRSMPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRPSRNANF*