KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:55:04 2014 Check: 00 .. Name: ENSTTRP00000009583/1-614 Len: 780 Check: 5041 Weight: 1.00 Name: bmy_01517T0/1-423 Len: 780 Check: 1705 Weight: 1.00 Name: ENSP00000347451/1-620 Len: 780 Check: 7975 Weight: 1.00 Name: BACU017880/1-766 Len: 780 Check: 2701 Weight: 1.00 Name: ENSBTAP00000043683/1-614 Len: 780 Check: 2340 Weight: 1.00 // 1 50 ENSTTRP00000009583/1-614 ------MLAG GVRSMPSPLL ACWQPILLLV LGSVLSGSXX XXXXXXXXXX bmy_01517T0/1-423 ------MLAG GVRSMPSPLL ACWQPILLLV LGSVLSGSAT GCPPRCECSA ENSP00000347451/1-620 MQVSKRMLAG GVRSMPSPLL ACWQPILLLV LGSVLSGSAT GCPPRCECSA BACU017880/1-766 ---------- ----MPSPLL ACWQPILLLV LGSVLSGSAT GCPPRCECSA ENSBTAP00000043683/1-614 ------MLAG GARSMPSPLL ACWQPILLLV LGSVLSGSAT GCPPRCECSA 51 100 ENSTTRP00000009583/1-614 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXEEL bmy_01517T0/1-423 QDRAVLCHRK RFVAVPEGIP TETRLLDLGK NRIKTLNQDE FASFPHLEEL ENSP00000347451/1-620 QDRAVLCHRK RFVAVPEGIP TETRLLDLGK NRIKTLNQDE FASFPHLEEL BACU017880/1-766 QDRAVLCHRK RFVAVPEGIP TETRLLDLGK NRIKTLNQDE FASFPHLEEL ENSBTAP00000043683/1-614 QDRAVLCHRK RFVAVPEGIP TETRLLDLGK NRIKTLNQDE FASFPHLEEL 101 150 ENSTTRP00000009583/1-614 ELNENIVSAV EPGAFNNLFN LRTLGLRSNR LKLIPLGVFT GLSNLTKLDI bmy_01517T0/1-423 ELNENIVSAV EPGAFNNLFN LRTLGLRSNR LKLIPLGVFT GLSNLTKLDI ENSP00000347451/1-620 ELNENIVSAV EPGAFNNLFN LRTLGLRSNR LKLIPLGVFT GLSNLTKLDI BACU017880/1-766 ELNENIVSAV EPGAFNNLFN LRTLGLRSNR LKLIPLGVFT GLSNLTKLDI ENSBTAP00000043683/1-614 ELNENIVSAV EPGAFNNLFN LRTLGLRSNR LKLIPLGVFT GLSNLTKLDI 151 200 ENSTTRP00000009583/1-614 SENKIVILLD YMFQDLYNLK SLEVGDNDLV YISHRAFSGL NSLEQLTLEK bmy_01517T0/1-423 SENKIVILLD YMFQDLYNLK SLEVGDNDLV YISHRAFSGL NSLEQLTLEK ENSP00000347451/1-620 SENKIVILLD YMFQDLYNLK SLEVGDNDLV YISHRAFSGL NSLEQLTLEK BACU017880/1-766 SENKIVILLD YMFQDLYNLK SLEVGDNDLV YISHRAFSGL NSLEQLTLEK ENSBTAP00000043683/1-614 SENKIVILLD YMFQDLYNLK SLEVGDNDLV YISHRAFSGL NSLEQLTLEK 201 250 ENSTTRP00000009583/1-614 CNLTSIPTEA LSHLHGLIVL RLRHLNINAI RDYSFKRLYR LKVLEISHWP bmy_01517T0/1-423 CNLTSIPTEA LSHLHGLIVL RLRHLNINAI RDYSFKRLYR LKVLEISHWP ENSP00000347451/1-620 CNLTSIPTEA LSHLHGLIVL RLRHLNINAI RDYSFKRLYR LKVLEISHWP BACU017880/1-766 CNLTSIPTEA LSHLHGLIVL RLRHLNINAI RDYSFKRLYR LKVLEISHWP ENSBTAP00000043683/1-614 CNLTSIPTEA LSHLHGLIVL RLRHLNINAI RDYSFKRLYR LKVLEISHWP 251 300 ENSTTRP00000009583/1-614 YLDTMTPNCL YGLNLTSLSI THCNLTAVPY LAVRHLVYLR FLNLSYN--- bmy_01517T0/1-423 YLDTMTPNCL YGLNLTSLSI THCNLTAVPY LAVRHLVYLR FLNLSYN--- ENSP00000347451/1-620 YLDTMTPNCL YGLNLTSLSI THCNLTAVPY LAVRHLVYLR FLNLSYN--- BACU017880/1-766 YLDTMTPNCL YGLNLTSLSI THCNLTAVPY LAVRHLVYLR FLNLSYNPIS ENSBTAP00000043683/1-614 YLDTMTPNCL YGLNLTSLSI THCNLTAVPY LAVRHLVYLR FLNLSYN--- 301 350 ENSTTRP00000009583/1-614 ---------- ---------- ---------- ---------- ---------- bmy_01517T0/1-423 ---------- ---------- ---------- ---------- ---------- ENSP00000347451/1-620 ---------- ---------- ---------- ---------- ---------- BACU017880/1-766 TIEGSMLHEL LRLQEIQLVG GQLAVVEPYA FRGLNYLRVL NVSGNQLTTL ENSBTAP00000043683/1-614 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000009583/1-614 ---------- ---------- ---------- ---------- ---------- bmy_01517T0/1-423 ---------- ---------- ---------- ---------- ---------- ENSP00000347451/1-620 ---------- ---------- ---------- ---------- ---------- BACU017880/1-766 EESAFHSVGN LETLILDSNP LACDCRLLWV FRRRWRLNFN RQQPTCATPE ENSBTAP00000043683/1-614 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000009583/1-614 ---------- ---------- ---------- ---------- ---------- bmy_01517T0/1-423 ---------- ---------- ---------- ---------- ---------- ENSP00000347451/1-620 ---------- ---------- ---------- ---------- ---------- BACU017880/1-766 FVQGKEFKDF PDVLLPNYFT CRRARIRDRK AQQVFVDEGH TVQFVCRADG ENSBTAP00000043683/1-614 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000009583/1-614 -------PIN AIEGSMLHEL LRLQEIQLVG GQLAVVEPYA FRGLNYLRVL bmy_01517T0/1-423 -------PIS TIEGSMLHEL LRLQEIQLVG GQLAVVEPYA FRGLNYLRVL ENSP00000347451/1-620 -------PIS TIEGSMLHEL LRLQEIQLVG GQLAVVEPYA FRGLNYLRVL BACU017880/1-766 DPPPSYNPIS TIEGSMLHEL LRLQEIQLVG GQLAVVEPYA FRGLNYLRVL ENSBTAP00000043683/1-614 -------PIS TIEGSMLHEL LRLQEIQLVG GQLAVVEPYA FRGLNYLRVL 501 550 ENSTTRP00000009583/1-614 NVSGNQLTTL EESAFHSVGN LETLILDSNP LACDCRLLWV FRRRWRLNFN bmy_01517T0/1-423 NVSGNQLTTL EESAFHSVGN LETLILDSNP LACDCRLLWV FRRRWRLNFN ENSP00000347451/1-620 NVSGNQLTTL EESVFHSVGN LETLILDSNP LACDCRLLWV FRRRWRLNFN BACU017880/1-766 NVSGNQLTTL EESAFHSVGN LETLILDSNP LACDCRLLWV FRRRWRLNFN ENSBTAP00000043683/1-614 NVSGNQLTTL EESAFHSVGN LETLILDSNP LACDCRLLWV FRRRWRLNFN 551 600 ENSTTRP00000009583/1-614 RQQPTCATPE FVQGKEFKDF PDVLLPNYFT CRRARIRDRK AQQVFVDEGH bmy_01517T0/1-423 RQQPTCATPE FVQGKEFKDF PDVLLPNYFT CRPSR----- ---------- ENSP00000347451/1-620 RQQPTCATPE FVQGKEFKDF PDVLLPNYFT CRRARIRDRK AQQVFVDEGH BACU017880/1-766 RQQPTCATPE FVQGKEFKDF PDVLLPNYFT CRRARIRDRK AQQVFVDEGH ENSBTAP00000043683/1-614 RQQPTCATPE FVQGKEFKDF PDVLLPNYFT CRRARIRDRK AQQVFVDEGH 601 650 ENSTTRP00000009583/1-614 TVQFVCRADG DPPPAILWLS PRKHLVSAKS NGRLTVFPDG TLEVRYAQVQ bmy_01517T0/1-423 ---------- ---------- ---------- ---------- ---------- ENSP00000347451/1-620 TVQFVCRADG DPPPAILWLS PRKHLVSAKS NGRLTVFPDG TLEVRYAQVQ BACU017880/1-766 TVQFVCRADG DPPPAILWLS PRKHLVSAKS NGRLTVFPDG TLEVRYAQVQ ENSBTAP00000043683/1-614 TVQFVCRADG DPPPAILWLS PRKHLVSAKS NGRLTVFPDG TLEVRYAQVQ 651 700 ENSTTRP00000009583/1-614 DNGTYLCIAA NAGGNDSMPA HLHVRSYSPD WPHQPNKTFA FISNQPGEGE bmy_01517T0/1-423 ---------- ---------- ---------- -----NANF- ---------- ENSP00000347451/1-620 DNGTYLCIAA NAGGNDSMPA HLHVRSYSPD WPHQPNKTFA FISNQPGEGE BACU017880/1-766 DNGTYLCIAA NAGGNDSMPA HLHVRSYSPD WPHQPNKTFA FISNQPGEGE ENSBTAP00000043683/1-614 DNGTYLCIAA NAGGNDSMPA HLHVRSYSPD WPHQPNKTFA FISNQPGEGE 701 750 ENSTTRP00000009583/1-614 ANSTRATVPF PFDIKTLIIA TTMGFISFLG VVLFCLVLLF LWSRGKGNTK bmy_01517T0/1-423 ---------- ---------- ---------- ---------- ---------- ENSP00000347451/1-620 ANSTRATVPF PFDIKTLIIA TTMGFISFLG VVLFCLVLLF LWSRGKGNTK BACU017880/1-766 ANSTRATVPF PFDIKTLIIA TTMGFISFLG VVLFCLVLLF LWSRGKGNTK ENSBTAP00000043683/1-614 ANSTRATVPF PFDIKTLIIA TTMGFISFLG VVLFCLVLLF LWSRGKGNTK 751 800 ENSTTRP00000009583/1-614 HNIEIEYVPR KSDAGISSAD APRKFNMKMI bmy_01517T0/1-423 ---------- ---------- ---------- ENSP00000347451/1-620 HNIEIEYVPR KSDAGISSAD APRKFNMKMI BACU017880/1-766 HNIEIEYVPR KSDAGISSAD APRKFNMKMI ENSBTAP00000043683/1-614 HNIEIEYVPR KSDAGISSAD APRKFNMKMI