Part of scaffold_1 (Scaffold)

For more information consult the page for scaffold_1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SMG6 ENSTTRG00000001175 (Bottlenosed dolphin)

Gene Details

SMG6 nonsense mediated mRNA decay factor

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001102, Bottlenosed dolphin)

Protein Percentage 85.43%
cDNA percentage 86.01%
Ka/Ks Ratio 0.393 (Ka = 0.0123, Ks = 0.0313)

SMG6 ENSBTAG00000000267 (Cow)

Gene Details

telomerase-binding protein EST1A

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000000333, Cow)

Protein Percentage 94.47%
cDNA percentage 93.35%
Ka/Ks Ratio 0.14035 (Ka = 0.0289, Ks = 0.2056)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2577 bp    Location:3903814..3862268   Strand:-
>bmy_00185
ATGGCGGAGGGGTTGGAGCGTGTCCGGATCTCCGCGTCGGAGCTGCGAGGGATCCTGGCCACTCTGGCTCCGCAGGCCGGGAGCAGAGAAAACATGAAGGAGCCCAGGCAGCGCAAAGATAACAGGCGCCCAGATCTGGAAATCTATAAGCCTGGTCTTTCCCGACTAAGGAACAGACCTAAAATCAAGGAACCCTCTGGGAGTCACGAATTTAAGGATGTAATTGTTAATGACAGAGATTCTTCTGCTGTTGGAAGTGGTACACAGCTCATTAAAGATGTCTGCAAAGACAGCCCACAGCAAAATGGTCCTGTAGACCCAGAAAATACTCGGGCACAGGAGTCTTTTCCTAGGACTGTTGGGCAGGAGGATCGAAGTCTAAGAATTATCAAGAGAACAAAGAAACCTGACATGCAGATCTATCAGCCTGGAAGGCGTTTGCAGACTGTTACCAAAGAATCGACCAGCAGGGTGGATGAGGAAGAAATTCTCAACCAGGTAGAACAACTGAGAGTAGAGGAAGATGCGTGTAGGGGAAATGTGAAAGAGGAGGTTGTGAACAAGCCAGACAAAGAGGAGGCAGAAAAGAGCCTAAGTGGTGACAGAATAAGGGCTGCAAAGGGGGAAAAAGGAAAGAGGGTTGAAAAAGGGGAGGGCGTGAAGAAGGTGAATGATGACCCAGCTCAGGGGAAGCCAGGTTCTGCGAAGCGCTACTCCCGCTCAGACAAACGAAGGAACCGCTACCGCACTTGCAGTACCAGCTCAGCGGGTAGCAACAACAGTGCCGAGGGGACTGGCCTGACTGATAATGGAAGTCGCCGCCGCCGCCAGGATCGGACCAAGGAGAGACCACGACTGAAGAAACAAGTATCTATGTCCTCAACTGACTCCTTGGATGAGGACAGAATTGATGAGTCTGATGGGCCACGGAGGAGCTCAGAAAGGAAGAAACATTTAGAAAGAAGCTGGTCTGGCTGTGGGGAGGGAGAGCAGAAAAGCAATGGTAAAGAAAATCGAGGCACTCTTCGCGTTACTTTCGATGCAGAAACCATGAACAAAGATTCCCCCATGGTGAGGTCAGCCAGGGAGGATTCGGATAAGTTAAAGTCAGACAAAGGCTCGAGCAGTGGGGGCAAAGGCTCTGAGAAGCAGGAGTCCAAAAACCTGAGACAAGAACTTCGGGGTCGTGGCCGTGGCATTCTGATTCTGCCTGCCCATACCACCCTGTCTGTCAATTCAGCCGGTTCTCCAGAGTCTACGCCTTTGGGACCTCGGCTTTTATTTGGATCTGGTAGTAAGGGATCTCGGAGTTGGGGCCGAGGAGGCACCACTCGACGATTGTGGGACCCAAACAATCCTGATCAGAAACCTGCTCTAAAGAGCCAGACACCGCAGCTACATTTCTTGGACACTGATGATGAAGTCAGCCCTACCTCTTGGGGTGACTCACGCCAGGCCCAAGCATCTTACTATAAGTTTCAAAACTCAGACAACCCTTATTATTACCCCCGGACACCAGGCCCCGCCTCCCAGTATCCTTACACAGGCTATAGCCCTCTGCAGTACCCGGTGGGCCCTACAAATGGTGTGTACCCAGCGCCTTACTACCCAGGCTACCCAACTCCATCAGGACAGTATGTCTGTAGCCCCCTCCCTGCCAGCACCATGAGTCCTGAGGAGATGGAGCAACACATGAGGAGCATGCAGCAACAGGAACTACATCGGCTTCTCCGGGTGGCTGACAACCAAGAACTGCAGCTCAGCAACCTGCTCTCCAGGGACCGCATCAGTCCTGAGGGCCTGGAGAAGATGGCTCAGCTCAGAGCTGAACTGCTGCAGCTGTATGAGCGCTGTATTCTATTAGATATTGAGTTCTCTGATAATCAGAATGTGGATCAGATCCTGTGGAAGAATGCTTTCTATCAGGTGATTGAGAAGTTCAGGCAGCTTCTCAAGGATCCGAATGTTGAGAACCCAGAACAGATTCGGAACAGACTTTTGGAGCTCTTGGATGAGGGTAGTGACTTCTTTGATAGTTTGCTTCAGAAGCTGCAGGTAAAATATGCCTTGATCAGTGCCCAGCGATGTATGATTTGCCAAGGAGATATTGCCAGGTATCGGGAGCAAGCCAATGACACGGCAAACTACGGGAAAGCACGCAGCTGGTACCTGAAAGCCCAGCACATTGCTCCCAAGAATGGGCGCCCCTATAACCAGTTGGCTCTGCTGGCAGTGTATACGAGGAGGAAGCTTGATGCCGTCTATTACTATATGCGCAGTCTAGCTGCCAGCAACCCTATCCTGACTGCCAAGGAGAGTCTCATGAGCTTGTTTGAAGAGACCAAAAGGAAGGCAGAACAGATGGAAAAGAAGCAACATGAGGAATTGGAACTGAGCCCTGGCCAATGGCGGAAAGGAAAGAAATCCACCTTCCGGCATGTTGGAGATGACACCACTCGCCTGGAGATCTGGATTCATCCATCCCATCCCCGGTCCTCCCAGGGCACTGAGTCTGGGAAGGATTCTGAGCAGGAGAATGGGCTGGGCAGCCTGAGCCCCAGTGATGTAAGTTCCTGA

Related Sequences

bmy_00185T0 Protein

Length: 859 aa      View alignments
>bmy_00185T0
MAEGLERVRISASELRGILATLAPQAGSRENMKEPRQRKDNRRPDLEIYKPGLSRLRNRPKIKEPSGSHEFKDVIVNDRDSSAVGSGTQLIKDVCKDSPQQNGPVDPENTRAQESFPRTVGQEDRSLRIIKRTKKPDMQIYQPGRRLQTVTKESTSRVDEEEILNQVEQLRVEEDACRGNVKEEVVNKPDKEEAEKSLSGDRIRAAKGEKGKRVEKGEGVKKVNDDPAQGKPGSAKRYSRSDKRRNRYRTCSTSSAGSNNSAEGTGLTDNGSRRRRQDRTKERPRLKKQVSMSSTDSLDEDRIDESDGPRRSSERKKHLERSWSGCGEGEQKSNGKENRGTLRVTFDAETMNKDSPMVRSAREDSDKLKSDKGSSSGGKGSEKQESKNLRQELRGRGRGILILPAHTTLSVNSAGSPESTPLGPRLLFGSGSKGSRSWGRGGTTRRLWDPNNPDQKPALKSQTPQLHFLDTDDEVSPTSWGDSRQAQASYYKFQNSDNPYYYPRTPGPASQYPYTGYSPLQYPVGPTNGVYPAPYYPGYPTPSGQYVCSPLPASTMSPEEMEQHMRSMQQQELHRLLRVADNQELQLSNLLSRDRISPEGLEKMAQLRAELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLLKDPNVENPEQIRNRLLELLDEGSDFFDSLLQKLQVKYALISAQRCMICQGDIARYREQANDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEELELSPGQWRKGKKSTFRHVGDDTTRLEIWIHPSHPRSSQGTESGKDSEQENGLGSLSPSDVSS*