KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:59 2014 Check: 00 .. Name: ENSTTRP00000001102/1-1410 Len: 1419 Check: 5126 Weight: 1.00 Name: ENSP00000263073/1-1419 Len: 1419 Check: 9443 Weight: 1.00 Name: ENSBTAP00000000333/1-1385 Len: 1419 Check: 1898 Weight: 1.00 Name: bmy_00185T0/1-858 Len: 1419 Check: 2093 Weight: 1.00 Name: BACU006966/1-877 Len: 1419 Check: 6458 Weight: 1.00 // 1 50 ENSTTRP00000001102/1-1410 MAEGLERVRI SASELRGILA TLAPQAGSRE NM---KEPRQ RKDNRRPDLE ENSP00000263073/1-1419 MAEGLERVRI SASELRGILA TLAPQAGSRE NMKELKEARP RKDNRRPDLE ENSBTAP00000000333/1-1385 ---------- ---------- ------NMAE NM---KEPRQ RKDNRRPDLE bmy_00185T0/1-858 MAEGLERVRI SASELRGILA TLAPQAGSRE NM---KEPRQ RKDNRRPDLE BACU006966/1-877 ---------- ---------- ---------- -M---KEPRQ RKDNRRPDLE 51 100 ENSTTRP00000001102/1-1410 IYKPGLSRLR NRPKIKEPSG GHEFKDEIVN DRDSSAVGSG TQLIKDVCKD ENSP00000263073/1-1419 IYKPGLSRLR NKPKIKEPPG SEEFKDEIVN DRDCSAVENG TQPVKDVCKE ENSBTAP00000000333/1-1385 IYKPGLSRLR NRPKIKEPSG SDESKNEVVN DRDSSAVGNC TQLIKDVCKD bmy_00185T0/1-858 IYKPGLSRLR NRPKIKEPSG SHEFKDVIVN DRDSSAVGSG TQLIKDVCKD BACU006966/1-877 IYKPGLSRLR NRPKIKEPSG SHEFKDEIVN DRDSSAVGSG TQLIKDVCKD 101 150 ENSTTRP00000001102/1-1410 --SPQQNGPA DPENTRAQES FPRTVGQEDR SLRIIKRTKK PDMQIYQPGR ENSP00000263073/1-1419 LNNQEQNGPI DPENNRGQES FPRTAGQEDR SLKIIKRTKK PDLQIYQPGR ENSBTAP00000000333/1-1385 --NPQQNGPV DSENIQAQES FPGTVGQEDR SLRIIKRTKK PDMQIYQPGR bmy_00185T0/1-858 --SPQQNGPV DPENTRAQES FPRTVGQEDR SLRIIKRTKK PDMQIYQPGR BACU006966/1-877 --SPQQNGPV DPENTRAQES FPRTVGQEDR SLRIIKRTKK PDMQIYQPGR 151 200 ENSTTRP00000001102/1-1410 RLQTVTKEST SRVDEEEIVN QVEQLRVEED ACRGNV-KGE VVNKPDKEEA ENSP00000263073/1-1419 RLQTVSKESA SRVEEEEVLN QVEQLRVEED ECRGNVAKEE VANKPDRAEI ENSBTAP00000000333/1-1385 RLQTVTKEAT SRVEEEEILN QVEQLRVEED ECRGNV-KEE VVNKPDREEA bmy_00185T0/1-858 RLQTVTKEST SRVDEEEILN QVEQLRVEED ACRGNV-KEE VVNKPDKEEA BACU006966/1-877 RLQTVTKEST SRVDEEEILN QVEQLRVEED ACRGNV-KEE VVNKADKEEA 201 250 ENSTTRP00000001102/1-1410 EKSLSGDTIR AAKGEKGKRV EKGEGVKKVN DDPAQGKPGS VKRYSRSDKR ENSP00000263073/1-1419 EKSPGGGRVG AAKGEKGKRM GKGEGVRETH DDPARGRPGS AKRYSRSDKR ENSBTAP00000000333/1-1385 EKSLSGDRVR AAKGEKGKRV ERGEGVKKAN EDSAQGKPGS AKRYSRSDKR bmy_00185T0/1-858 EKSLSGDRIR AAKGEKGKRV EKGEGVKKVN DDPAQGKPGS AKRYSRSDKR BACU006966/1-877 EKSLSGDRIR AAKGEKGKRV EKGEGVKKVN DDPAQGKPGS AKRYSRSDKR 251 300 ENSTTRP00000001102/1-1410 RNRYRTCSTS SAGSNNSAEG TGLTDNGSRR RRQDRTKERP RLKKQVSMSS ENSP00000263073/1-1419 RNRYRTRSTS SAGSNNSAEG AGLTDNGCRR RRQDRTKERP RLKKQVSVSS ENSBTAP00000000333/1-1385 RNRYRTCSTS SAGSNNSAEG AGLTDSGSRR RRQDRTKERP RLKKQVSMSS bmy_00185T0/1-858 RNRYRTCSTS SAGSNNSAEG TGLTDNGSRR RRQDRTKERP RLKKQVSMSS BACU006966/1-877 RNRYRTCSTS SAGSNNSAEG TGLTDNGSRR RRQDRTKERP RLKKQVSMSS 301 350 ENSTTRP00000001102/1-1410 TDSLDEDRID ESD--GPQRS SERKKHLERS WSGCGEGEQK SNGKENRGTL ENSP00000263073/1-1419 TDSLDEDRID EPDGLGPRRS SERKRHLERN WSGRGEGEQK NSAKEYRGTL ENSBTAP00000000333/1-1385 TDSLDEDRID EPD--GPRRS SERKKHSERS WSGRGEGEQK SNGKENRGTL bmy_00185T0/1-858 TDSLDEDRID ESD--GPRRS SERKKHLERS WSGCGEGEQK SNGKENRGTL BACU006966/1-877 TDSLDEDRID ESD--GPRRS SERKKHLERS WSGCGEGEQK SNGKENRGTL 351 400 ENSTTRP00000001102/1-1410 RVTFDAETMN KDSSMVRSAR EDSDRLKSDK GSSSVGKGSE KQESKNLRQE ENSP00000263073/1-1419 RVTFDAEAMN KESPMVRSAR DDMDRGKPDK GLSSGGKGSE KQESKNPKQE ENSBTAP00000000333/1-1385 RVTFDAETMN KDSPVVRSAR EEVDRLKPDK GSSGGGKGSE KPESKNLRQE bmy_00185T0/1-858 RVTFDAETMN KDSPMVRSAR EDSDKLKSDK GSSSGGKGSE KQESKNLRQE BACU006966/1-877 HVTFDAETMN KDSPMVRSAR EDSDRLKSDK GSSSGGKGSE KQESKNLRQE 401 450 ENSTTRP00000001102/1-1410 LRGRGRGILI LPAHTTLSVN SAGSPESTPS GPRLLFGSGS KGSRSWGRGG ENSP00000263073/1-1419 LRGRGRGILI LPAHTTLSVN SAGSPESAPL GPRLLFGSGS KGSRSWGRGG ENSBTAP00000000333/1-1385 LRGRGRGILI LPAHTTLSVS SAGSPESTPL GPRLLFGTGS KGSRSWGRGG bmy_00185T0/1-858 LRGRGRGILI LPAHTTLSVN SAGSPESTPL GPRLLFGSGS KGSRSWGRGG BACU006966/1-877 LRGRGRGILI LPAHTTLSVN SAGSPESTPL GPRLLFGSGS KGSRSWGRGG 451 500 ENSTTRP00000001102/1-1410 TTRRLWDPNN PDQKPALKSQ TPQLHFLDTD DEVSPTSWGD SRQAQASYYK ENSP00000263073/1-1419 TTRRLWDPNN PDQKPALKTQ TPQLHFLDTD DEVSPTSWGD SRQAQASYYK ENSBTAP00000000333/1-1385 TTRRLWDPNN PEQKPALKSQ TPQLHFLDTD DEVSPTSWGD SRQAQASYYK bmy_00185T0/1-858 TTRRLWDPNN PDQKPALKSQ TPQLHFLDTD DEVSPTSWGD SRQAQASYYK BACU006966/1-877 TTRRLWDPNN PDQKPALKSQ TPQLHFLDTD DEVSPTSWGD SRQAQASYYK 501 550 ENSTTRP00000001102/1-1410 FQNSDNPYYY PRTPGPASQY PYTGYSPLQY PVGPTNGVYP APYYPGYPTP ENSP00000263073/1-1419 FQNSDNPYYY PRTPGPASQY PYTGYNPLQY PVGPTNGVYP GPYYPGYPTP ENSBTAP00000000333/1-1385 FQNSDNPYYY PRAPGPASQY PYTGYSPLQY PVGPTNGVYP APYYPGYPAP bmy_00185T0/1-858 FQNSDNPYYY PRTPGPASQY PYTGYSPLQY PVGPTNGVYP APYYPGYPTP BACU006966/1-877 FQNSDNPYYY PRTPGPASQY PYTGYSPLQY PVGPTNGVYP APYYPGYPTP 551 600 ENSTTRP00000001102/1-1410 SGQYVCSPLP ASTMSPEEME QHMRNMQQQE LHRLLRVADN QELQLSNLLS ENSP00000263073/1-1419 SGQYVCSPLP TSTMSPEEVE QHMRNLQQQE LHRLLRVADN QELQLSNLLS ENSBTAP00000000333/1-1385 SGQYVCSPLP ASTMSPEEME QHMRNMQQQE LHRLLRVADN QELQLSNLLS bmy_00185T0/1-858 SGQYVCSPLP ASTMSPEEME QHMRSMQQQE LHRLLRVADN QELQLSNLLS BACU006966/1-877 SGQYVCSPLP ASTMSPEEME QHMRSMQQQE LHRLLRVADN QELQLSNLLS 601 650 ENSTTRP00000001102/1-1410 RDRISPEGLE KMAQLRAELL QLYERCILXX XXXXXXXXXX XXXXXXXXXX ENSP00000263073/1-1419 RDRISPEGLE KMAQLRAELL QLYERCILLD IEFSDNQNVD QILWKNAFYQ ENSBTAP00000000333/1-1385 RDRISPEGLE KMAQLRAELL QLYERCILLD IEFSDNQNVD QILWKNAFYQ bmy_00185T0/1-858 RDRISPEGLE KMAQLRAELL QLYERCILLD IEFSDNQNVD QILWKNAFYQ BACU006966/1-877 RDRISPEGLE KMAQLRAELL QLYERCILLD IEFSDNQNVD QILWKNAFYQ 651 700 ENSTTRP00000001102/1-1410 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000263073/1-1419 VIEKFRQLVK DPNVENPEQI RNRLLELLDE GSDFFDSLLQ KLQVTYKFKL ENSBTAP00000000333/1-1385 VIEKFRQLLK DPNVENPEQI RNRLLELLDE GSDFFDSLLQ KLQVTYKFKL bmy_00185T0/1-858 VIEKFRQLLK DPNVENPEQI RNRLLELLDE GSDFFDSLLQ KLQ------- BACU006966/1-877 VIEKFRQLLK DPNVENPEQI RNRLLELLDE GSDFFDSLLQ KLQVTYKFKL 701 750 ENSTTRP00000001102/1-1410 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000263073/1-1419 EDYMDGLAIR SKPLRKTVKY ALISAQRCMI CQGDIARYRE QASDTANYGK ENSBTAP00000000333/1-1385 EDYMDGLAIR SKPLRKTVKY ALISAQRCMI CQGDIARYRE QANDTANYGK bmy_00185T0/1-858 ---------- -------VKY ALISAQRCMI CQGDIARYRE QANDTANYGK BACU006966/1-877 EDYMDGLAIR SKPLRKTVKY ALISAQRCMI CQGDIARYRE QANDTANYGK 751 800 ENSTTRP00000001102/1-1410 XXXXXXXXXH IAPKNGRPYN QLALLAVYTR RKLDAVYYYM RSLAASNPIL ENSP00000263073/1-1419 ARSWYLKAQH IAPKNGRPYN QLALLAVYTR RKLDAVYYYM RSLAASNPIL ENSBTAP00000000333/1-1385 ARSWYLKAQH IAPKNGRPYN QLALLAVYTR RKLDAVYYYM RSLAASNPIL bmy_00185T0/1-858 ARSWYLKAQH IAPKNGRPYN QLALLAVYTR RKLDAVYYYM RSLAASNPIL BACU006966/1-877 ARSWYLKAQH IAPKNGRPYN QLALLAVYTR RKLDAVYYYM RSLAASNPIL 801 850 ENSTTRP00000001102/1-1410 TAKESLMSLF EETKRKAEQM EKKQHEELEL SPDQWRKAKK STFRHVGDDT ENSP00000263073/1-1419 TAKESLMSLF EETKRKAEQM EKKQHEEFDL SPDQWRKGKK STFRHVGDDT ENSBTAP00000000333/1-1385 TAKESLMSLF EETKRKAEQM EKKQHEELEL SPDQWRKGKK STFRHVGDDT bmy_00185T0/1-858 TAKESLMSLF EETKRKAEQM EKKQHEELEL SPGQWRKGKK STFRHVGDDT BACU006966/1-877 TAKESLMSLF EETKRKAEQM EKKQHEELEL SPGQWRKGKK STFRHVGDDT 851 900 ENSTTRP00000001102/1-1410 TRLEIWIHPS HPRSSQGTES GKDSEQENGL GSLSPSDLNK RFILSFLHAH ENSP00000263073/1-1419 TRLEIWIHPS HPRSSQGTES GKDSEQENGL GSLSPSDLNK RFILSFLHAH ENSBTAP00000000333/1-1385 TRLEIWIHPS HPRSSQGTES GKDSEQENGL GSLSPSDLNK RFILSFLHAH bmy_00185T0/1-858 TRLEIWIHPS HPRSSQGTES GKDSEQENGL GSLSPSDV-- ---------- BACU006966/1-877 TRLEIWIHPS HPRSSQGAES GKDSEQENGL GSLSPSDC-- ---------- 901 950 ENSTTRP00000001102/1-1410 GKLFTRIGME TFPAVAEKVL KEFQVLLQRS PSPIGSTRML QLMTINMFAV ENSP00000263073/1-1419 GKLFTRIGME TFPAVAEKVL KEFQVLLQHS PSPIGSTRML QLMTINMFAV ENSBTAP00000000333/1-1385 GKLFTRIGME TFPAVAEKVL KEFQVLLQHS PSPIGSTRML QLMTINMFAL bmy_00185T0/1-858 ---------- ---------- ---------- ---------- ---------- BACU006966/1-877 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000001102/1-1410 HNSQLKDCFS EECRSVIQEQ AAALGLAMFS LLVQRCTDLL KESAKPQLSS ENSP00000263073/1-1419 HNSQLKDCFS EECRSVIQEQ AAALGLAMFS LLVRRCTCLL KESAKAQLSS ENSBTAP00000000333/1-1385 HNSQLKDCFS EECRSVIQEQ AAALGLAMFS LLVRRCTYLL KESAKAQLSS bmy_00185T0/1-858 ---------- ---------- ---------- ---------- ---------- BACU006966/1-877 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000001102/1-1410 PEEEEDQDDI KVSSFVPDLK ELLPSVKVWS DWMLGYPDTW NPPPTSLDLP ENSP00000263073/1-1419 PEDQDDQDDI KVSSFVPDLK ELLPSVKVWS DWMLGYPDTW NPPPTSLDLP ENSBTAP00000000333/1-1385 PEGEEDQDDI KVSSFVPDLK ELLPSVKVWS DWMLGYPDTW NPPPTSLELP bmy_00185T0/1-858 ---------- ---------- ---------- ---------- --SS------ BACU006966/1-877 ---------- ---------- ---------- ---------- --PLHNLCTP 1051 1100 ENSTTRP00000001102/1-1410 SQVAVDVWSM LADFCNILTA VNQSEVPLYK DPDDDLTLLI LEEDRLLSGF ENSP00000263073/1-1419 SHVAVDVWST LADFCNILTA VNQSEVPLYK DPDDDLTLLI LEEDRLLSGF ENSBTAP00000000333/1-1385 SQVAVDVWST LADFCNILTA VNQSEVPLYK DPDDDLTLLI LEEDRLLSGF bmy_00185T0/1-858 ---------- ---------- ---------- ---------- ---------- BACU006966/1-877 AAAAATTAAT TVQKKAVMCG ---------- ---------- ---------- 1101 1150 ENSTTRP00000001102/1-1410 VPLLAAPQDP CYVEKTSDKV IAADCKRVTV LKYFLEALCG QEEPLLAFKG ENSP00000263073/1-1419 VPLLAAPQDP CYVEKTSDKV IAADCKRVTV LKYFLEALCG QEEPLLAFKG ENSBTAP00000000333/1-1385 VPLLAAPQDP CYVEKTSDKV IAADCKRVTV LKYFLEALCG QEEPLLAFKG bmy_00185T0/1-858 ---------- ---------- ---------- ---------- ---------- BACU006966/1-877 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000001102/1-1410 GKYVSVAPVP DTMGKEMGSQ EGKQLEDEEE DVVIEDFEED SEAEGSGGED ENSP00000263073/1-1419 GKYVSVAPVP DTMGKEMGSQ EGTRLEDEEE DVVIEDFEED SEAEGSGGED ENSBTAP00000000333/1-1385 GKYVSVAPVP DTMGKEMGSQ EGKQLEDEEE DVVIEDFEED SEAEGSGGED bmy_00185T0/1-858 ---------- ---------- ---------- ---------- ---------- BACU006966/1-877 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000001102/1-1410 DIRELRAKKL ALARKIAEQQ RRQEKIQAVL EDQSHMRQME LEIRPLFLVP ENSP00000263073/1-1419 DIRELRAKKL ALARKIAEQQ RRQEKIQAVL EDHSQMRQME LEIRPLFLVP ENSBTAP00000000333/1-1385 DIRELRAKKL ALARKIAEQQ RRQEKIQAVL EDQSHVRQME LEIRPLFLVP bmy_00185T0/1-858 ---------- ---------- ---------- ---------- ---------- BACU006966/1-877 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSTTRP00000001102/1-1410 DTNGFIDHLA SLAQLLESRK YILVVPLIVI SELDGLAKGQ DTDHRAGGYA ENSP00000263073/1-1419 DTNGFIDHLA SLARLLESRK YILVVPLIVI NELDGLAKGQ ETDHRAGGYA ENSBTAP00000000333/1-1385 DTNGFIDHLA SLAQLLESRN YILVVPLIVI NELDGLAKGQ ETDHRAGGYA bmy_00185T0/1-858 ---------- ---------- ---------- ---------- ---------- BACU006966/1-877 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSTTRP00000001102/1-1410 RVVQEKARKS IEFLEQRFES RDSCLRALTS RGNELESIAF RSEDITGQLG ENSP00000263073/1-1419 RVVQEKARKS IEFLEQRFES RDSCLRALTS RGNELESIAF RSEDITGQLG ENSBTAP00000000333/1-1385 RVVQEKARKS IEFLERRFES RDSCLRALTS RGNELESIAF RSEDITGQLG bmy_00185T0/1-858 ---------- ---------- ---------- ---------- ---------- BACU006966/1-877 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSTTRP00000001102/1-1410 NNDDLIL-CC LHYCKDKAKD FMPTNKXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000263073/1-1419 NNDDLILSCC LHYCKDKAKD FMPASKEEPI RLLREVVLLT DDRNLRVKAL ENSBTAP00000000333/1-1385 NNDDLILSCC LHYCKDKAKD FMPTNKEEPI RLLREVVLLT DDRNLRVKAL bmy_00185T0/1-858 ---------- ---------- ---------- ---------- ---------- BACU006966/1-877 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSTTRP00000001102/1-1410 XXXXXXXXXP AFLTWAQVG ENSP00000263073/1-1419 TRNVPVRDIP AFLTWAQVG ENSBTAP00000000333/1-1385 TRNVPVRDIP AFLTWAQVG bmy_00185T0/1-858 ---------- --------- BACU006966/1-877 ---------- ---------