Part of scaffold_1 (Scaffold)

For more information consult the page for scaffold_1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SCARF1 ENSTTRG00000006867 (Bottlenosed dolphin)

Gene Details

scavenger receptor class F, member 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006493, Bottlenosed dolphin)

Protein Percentage 97.34%
cDNA percentage 97.39%
Ka/Ks Ratio 0.17175 (Ka = 0.0125, Ks = 0.0727)

SCARF1 ENSBTAG00000011483 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000015261, Cow)

Protein Percentage 90.01%
cDNA percentage 91.52%
Ka/Ks Ratio 0.21291 (Ka = 0.0509, Ks = 0.2392)

SCARF1  (Minke Whale)

Gene Details

scavenger receptor class F, member 1

External Links

Gene match (Identifier: BACU010460, Minke Whale)

Protein Percentage 93.14%
cDNA percentage 93.22%
Ka/Ks Ratio 0.16801 (Ka = 0.0069, Ks = 0.041)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2613 bp    Location:3329979..3317057   Strand:-
>bmy_00173
ATGGCAGCCCGCCCCTCCGGCCTGGTTTCCTCAGGAAAAGCCTTGGGAGGAAGCAGGGAGGGGGTTGGGAGCTGTGGGGGCCAGACTAACCCAAGCCCTCCCACTGCACTGGCCGCCATGGGGCTGGGGCTCCTCTGCCCTCTGCTGCTGCTCTGGACTCGGGGGACCCAGGGGTCTGAGCTGGACCCCAATGGGCAGCACGTCTGCATGGCCAGCAGCCCCTCTGCTGAGCTCCAGTGCTGCCCAGGCTGGAGGCAGAAAGATCGAGAATGCACCACCCCCATCTGCGAGGGGCTGGACGTCTGCCGGGAAGACGAGGTATGTGTGAAACCAGGCCTCTGTCGATGCAAACCTGGATTCTTCGGGGCCCGGTGCAACTCCCGCTGCCCGGGCCAGTACTGGGGCCCCGACTGCCGGGAGAACTGCGCCTGCCACCCGCACGGCCAGTGCGAGCCGGCCACGGGCGTGTGCCACTGCCAATCCGATCGCTGGGGCGACCGCTGCGAGTTCCCGTGCGCCTGCGGCCCCCACGGGCGTTGCAACCCCGAGACCGGCGCGTGCCGCTGCGAGCCCGGCTGGTGGTCGCCCACGTGCCGTCGCCCGTGCCAGTGCAACCCGGCGGCGGCGCGCTGCGATCAGGCCACCGGCTCCTGCCTGTGCGAGCCGGGCTGGTGGGGCCGCCGCTGCAGCTTCCGCTGCGCCTGCCACGGCTCGCCGTGCGCGCAGGAGTCGGGCCGCTGCGCCTGCCGGCCGGGCTGGTGGGGCTCCGAGTGCCGGCAGCCTTGCGAGTGCGTGCGCGGCCGCTGCAGCGCCGCCTCCGGCCTGTGCACATGCCCGCCCGGCTTCCGCGGCGCGCGCTGCGAGCTGCCCTGCCCCGCAGGCCGCTTCGGGCTGCAGTGCCGCGACAGCTGTGGCCACTGCAAGCAGCATGAGCCATGCTCTGCAGACACAGGCAGCTGCGAGTCCTGCGAGCCGGGCTGGAATGGGACTCAGTGCCACGAGCCCTGCCCTCCTGGCACCTTTGGCGAGAGCTGCAGGCAGCAGTGCCCCCACTGCCGGCTTGGGGAGGCCTGCCAGCCAGACACCGGGCACTGTCGACATTGTGACCCTGGCTGGCTGGGGCCCAGGTGTGAAGACCCCTGCCCGATTGGTACCTTTGGGGAGGGTTGTGGCTCTACCTGCCCCACCTGTGTCCAGGGGGCCTGCGATGCTGTGACTGGGGAGTGTGTSTGCAACGCCGGCTACTGGGGGCCCAGCTGCAACACTTCGTGCCCATCTGGCTTCCATGGAAACAACTGCTCTGTTCCCTGCGAATGTCCAGAGGGAAACTGCCACCCTGTCTCTGGGGCCTGCCAGCTGGGATCTCATAGTCAGGATGCCGCCCTCATTGTGGGCATTCTTGTGCCTCTTCTGCTTCTCCTCCTGGCCATCGCCTGCTGTGCCTGCTGCTGCTGGGCTGCCCGGTTGGACCCCAAGGACAGGCCAGCAAGAGATGGAACCGCTATGTCCAGGATGAAGCTGCAGGTCTGGGGGGCACTGACCTCCAGCCTGGGCTCTGCGCTGCCCTGCGGTTCCCTCAGCAGCCACAAGCTTCCCTGGGTGACAGTCTCGCACCATGATCCGGAGATCCCCTTCAACCATAGCTTCATCGAGCCGCCCTCGGCTGGCTGGGCCTCAGACGACTCCTTCTCTACTGATCCCGAGTCTGGAGAAGAGGACGAGGGTCCTGCCTACTGCGTGCCACCCCAAGAAGGGATGGTCCCTGTTGCCCAAGCAGAGTCACCAGAGGCCAGCCTGGCCGGAGGTCCCTTCCCTCCCCCTGAGGATGCCTCCACGCCGTTTGCCATCCCGCGCACTTCCAGCCTCGCTCGGGCCAAGCGGCCATCGGTCTCCTTTGCTGAAGGCACCAAGTTTGCACCACAGAGTTGCCGAGGCTCGGGGGAGCTCTCCAGCCCTCTCCGTAAGCCCAAGAGGCTCTCCCGGGGGGGCCAGCCAGGTCCTGAAAGCCAGGAAGCCGAGGAGTCCACAGGCCCAGAGCAAGCAGAAATGAACGGGGCCCCTCCTGGTGCCGCCAGCCCCAGGGATTCAGCCATTGGCCGCCGCCGGCTCCCGCTTAGTGGCCGGACAGTGGCTGAACGTGTGGAAGCCATCGAGGGCAGTGTCCAGGAGAGTGCAGGCTCTGTGACCACAATCTACATGCTGGCAGGGACACCCCGGGGATCTGAGGGCCCCGTCCGGTCTGTCCTCCGCCGTTTTGGTAGCTTCCAGAAAGGCCAGGCAGAGCCCAAGGTCAAGAGTGCCATCCCCAAGCCACCACGCCGGGCCCTGAGTCGGAACAAGGGCAGCCCCGGGCTGGCCTCTGGCTCTGCCAATCAGAGCTCCAGCTCAGCCCCAAGTGAGGAGCTGACTGGGGCCTTGGAGTCTGCAGGGACTGGGCCAGAGGAAGTGGCCAGGGGGCTAGGGGATGGCATCAAGAGCTCAGGGAGGGGCCAGGAGCTGGTCCCTGAGGGTGGTCCCCTAGAACAGGATCCCCAGAAGCTGGCTGATGAGGAAGGGCAGGAGGAGCCCCAGTATGAGAATGTTGTACTCATCTCTGGGCCACCAGAGCCCTGA

Related Sequences

bmy_00173T0 Protein

Length: 871 aa      View alignments
>bmy_00173T0
MAARPSGLVSSGKALGGSREGVGSCGGQTNPSPPTALAAMGLGLLCPLLLLWTRGTQGSELDPNGQHVCMASSPSAELQCCPGWRQKDRECTTPICEGLDVCREDEVCVKPGLCRCKPGFFGARCNSRCPGQYWGPDCRENCACHPHGQCEPATGVCHCQSDRWGDRCEFPCACGPHGRCNPETGACRCEPGWWSPTCRRPCQCNPAAARCDQATGSCLCEPGWWGRRCSFRCACHGSPCAQESGRCACRPGWWGSECRQPCECVRGRCSAASGLCTCPPGFRGARCELPCPAGRFGLQCRDSCGHCKQHEPCSADTGSCESCEPGWNGTQCHEPCPPGTFGESCRQQCPHCRLGEACQPDTGHCRHCDPGWLGPRCEDPCPIGTFGEGCGSTCPTCVQGACDAVTGECVCNAGYWGPSCNTSCPSGFHGNNCSVPCECPEGNCHPVSGACQLGSHSQDAALIVGILVPLLLLLLAIACCACCCWAARLDPKDRPARDGTAMSRMKLQVWGALTSSLGSALPCGSLSSHKLPWVTVSHHDPEIPFNHSFIEPPSAGWASDDSFSTDPESGEEDEGPAYCVPPQEGMVPVAQAESPEASLAGGPFPPPEDASTPFAIPRTSSLARAKRPSVSFAEGTKFAPQSCRGSGELSSPLRKPKRLSRGGQPGPESQEAEESTGPEQAEMNGAPPGAASPRDSAIGRRRLPLSGRTVAERVEAIEGSVQESAGSVTTIYMLAGTPRGSEGPVRSVLRRFGSFQKGQAEPKVKSAIPKPPRRALSRNKGSPGLASGSANQSSSSAPSEELTGALESAGTGPEEVARGLGDGIKSSGRGQELVPEGGPLEQDPQKLADEEGQEEPQYENVVLISGPPEP*