Sequence details bmy_21848 (Coding sequence)

Part of scaffold_3315 (Scaffold)

For more information consult the page for scaffold_3315 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SSPN ENSTTRG00000007252 (Bottlenosed dolphin)

Gene Details

sarcospan

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000006863, Bottlenosed dolphin)

Protein Percentage 86.13%
cDNA percentage 89.4%
Ka/Ks Ratio 0.58188 (Ka = 0.0881, Ks = 0.1513)

SSPN ENSBTAG00000000393 (Cow)

Gene Details

sarcospan

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000000506, Cow)

Protein Percentage 84.39%
cDNA percentage 88.25%
Ka/Ks Ratio 0.4458 (Ka = 0.1016, Ks = 0.2279)

Additional orthologs identified in other species via the OPTIC pipeline.

SSPN (Human)   Sspn (Mouse)  

Genome Location

Sequence Coding sequence

Length: 522 bp    Location:78248..89988   Strand:+
Raw sequence 
>bmy_21848
ATGAAGACAAAGGGGAGAGTTTTGGCAATTGCCAACTTCACAATAGCCTCTAGGGACAAAGACAGTTATGTCTGCTTAGTGGCCTATCTTGGTTTGTTTATGCTTTGTGTCTCCTATCAAGTTGACGAACGGACATGTATCCAGTTTGCCATGAAACTCTTGTACTTTCTGCTGAGCGCCCTTGGCCTGACGGTCTGTGTGCTGGCCGTGGCGTTYGCCGCTCACCACTATGCACAGCTCACACAGTTTACCTGTGGAACCACGCTCGACGCCTGCCAGTGCAAACTGCCCTCCTCCGAGCCCCTCAGCAGGACCTTTGTATACCGGGATGTGACTGATTGTACCAGCATCACTGGCACTTTCAAACTGTTCTTACTCATCCAGATGATTCTGAACTTGGTCTGCGGCCTTGTGTGCTTGTTGGCCTGCTTTGTGATGTGGAAACACAGGTACCAGGTCTTTTACGTGGGTGTCAGGGTGTGTTCCCTGACAACTTCCGAAGGTCAGCAGCCAAAGGTCTAA

Related Sequences

bmy_21848T0 Protein

Length: 174 aa      View alignments
>bmy_21848T0
MKTKGRVLAIANFTIASRDKDSYVCLVAYLGLFMLCVSYQVDERTCIQFAMKLLYFLLSALGLTVCVLAVAFAAHHYAQLTQFTCGTTLDACQCKLPSSEPLSRTFVYRDVTDCTSITGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRVCSLTTSEGQQPKV*