Sequence details bmy_19768 (Coding sequence)

Part of scaffold_2179 (Scaffold)

For more information consult the page for scaffold_2179 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

COL2A1 ENSBTAG00000013155 (Cow)

Gene Details

Collagen alpha-1(II) chain

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000017509, Cow)

Protein Percentage 98.06%
cDNA percentage 94.43%
Ka/Ks Ratio 0.07694 (Ka = 0.0111, Ks = 0.1448)

Additional orthologs identified in other species via the OPTIC pipeline.

COL2A1 (Human)   Col2a1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 4623 bp    Location:38522..7221   Strand:-
Raw sequence 
>bmy_19768
ATGATCCGCCTCGGGGCTCCCCAGACGCTGGTGCTGCTGACGCTGCTCGTCGCCGCTGTCCTTCGGTGTCACGGCCAGGATGTCCAGAAGGCTGGCAGCTGTGTGCAGGACGGGCAGAGGTATAACGATAAGGATGTGTGGAAGCCCGAGCCCTGCCGGATCTGTGTCTGTGACACTGGGACTGTCCTCTGCGACGACATAATCTGTGAAGACATGAAAGACTGCCTCAGCCCCGAGACCCCCTTCGGAGAGTGCTGCCCCATCTGCTCGACTGACCTCACCACTGCCAGTGGTCGGCAACCAGGACCAAAGGGACAGAAAGGAGAACCTGGAGACATCAAGGATATTGTAGGACCCAAAGGACCTCCTGGGCCTCAGGGACCTGCAGGTGAACAAGGACCCAGAGGTGATCGTGGTGACAAAGGTGAAAAAGGTGCTCCTGGACCTCGTGGCAGAGATGGAGAGCCTGGGACCCCTGGAAACCCTGGCCCCCCTGGCCCTCCTGGCCCGCCTGGCCCCCCTGGTCTTGGTGGAGGCCCCATGGGACCTCGGGGACCTCCAGGCCCTGCTGGTGCTCCCGGACCTCAAGGATTTCAAGGCAACCCTGGTGAACCTGGGGAACCCGGCGTTGCTGGTCCCATGGGTCCCCGCGGTCCTTCTGGCCCCCCTGGAAAACCTGGTGATGATGGTGAAGCTGGAAAGGCTGGAAAACCTGGCGAGAGAGGCCTTCCTGGCCCTCAGGGTGCTCGCGGCTTCCCAGGAACCCCAGGCCTTCCTGGTGTCAAAGGTCACAGAGGTTACCCAGGTCTAGATGGTGCTAAGGGAGAAGCTGGTGCTCCAGGTGTGAAGGGTGAGAGTGGTTCCCCAGGAGAGAACGGTTCTCCAGGCCCAATGGGTGCTCGGGGCAACGATGGCCAACCCGGCCCCGCAGGGCCTCCGGGTCCCGTGGGTCCTGCTGGCGGTCCTGGCTTCCCCGGTGCTCCTGGTGCCAAGGGTGAAGCTGGCCCCACCGGTGCTCGAGGTCCTGAAGGTGCCCAAGGTCCTCGCGGTGAAGCTGGTACTCCTGGGTCCCCCGGGCCGGCTGGTGCTTCTGGTAACCCTGGATCTGATGGAATTCCTGGAGCTAAAGGATCTGCTGGTGCCCCTGGCATTGCTGGTGCTCCTGGCTTCCCTGGGCCCCGTGGTCCACCCGGCCCTCAAGGTGCAACTGGTCCTCTGGGCCCGAAAGGTCAAACGGGTGAGCCTGGTATTGCTGGCTTCAAAGGCGAACAAGGCCCCAAGGGAGAACCGGGCCCTGCTGGTCCCCAAGGAGCCCCCGGTCCTGCTGGTGAAGAAGGCAAAAGAGGGTCCCGTGGAGAGCCTGGAGGTGCTGGGCCCGCTGGGCCCCCTGGAGAAAGAGGTCCTCCTGGCAACCGTGGGTTCCCAGGTCAGGATGGTCTGGCAGGTCCCAAGGGAGCCCCTGGAGAGCGAGGGCCCAGTGGCCTTGCTGGTCCCAAGGGAGCCAATGGTGACCCTGGCCGTCCTGGAGAACCCGGCCTCCCTGGAGCCCGGGGTCTCACTGGTCGCCCTGGTGATGCTGGTCCTCAAGGCAAAGTTGGTCCTTCTGGTGAGCCTGGCAAAGCTGGTGAGAAAGGACTGCCTGGTGCTCCTGGTCTGAGAGGTCTCCCTGGCAAAGATGGTGAGACAGGAGCTGCAGGCCCCCCTGGACCCGCTGGACCTGCCGGGGAACGAGGCGAGCAGGGTGCTCCTGGGCCATCTGGGTTCCAGGGACTTCCTGGCCCGCCCGGTCCCCCAGGTGAAGGTGGAAAACCAGGTGACCAGGGCGTTCCTGGCGAAGCTGGAGCTCCCGGCCTCGTGGGTCCCAGGGGTGAACGAGGTTTCCCAGGGGAACGTGGCTCTCCCGGGTCCCAGGGCCTCCAGGGGCCCCGCGGCCTCCCTGGCACTCCTGGCACTGATGGTCCCAAAGTGAGTGAGGCGGGTCCTGCTGGCGGGGGTCCTCTGGGCTGGAAGGGGAGGGGGCTCAGGGGGGATGAAGATGGAAGGAGGGAGGGATGGAGGATGAGACAGAAAGGGGTCTGGGCAGAGGAAGAAGGGAAGGAAAGGGGGCTTGGGGCCTGGGGGGCCCAGGGGAAGTGCTGCCCTCCACAGATTCCTCTCCCACCGCAGGGCGCAGCTGGCCCAGCTGGCCCCACTGGGGCTCAGGGCCCTCCAGGTCTGCAGGGGATGCCCGGTGAGAGAGGAGCAGCTGGCATCGCCGGGCCCAAGGGAGACAGGGGTGATGTTGGTGAGAAAGGCCCCGAGGGAGCCCCCGGGAAGGACGGTGGACGAGGTCTGACTGGCCCCATTGGCCCCCCTGGCCCGGCCGGTGCCAACGGTGAGAAGGGAGAAGTTGGACCTCCTGGTCCTGCAGGAACTGCTGGTGCTCGCGGCGCCCCGGGTGAACGTGGAGAGACTGGACCCCCCGGACCCGCTGGATTTGCCGGTCCTCCTGGTGCTGACGGCCAGCCCGGTGCCAAAGGCGAGCAAGGAGAGGCTGGCCAGAAAGGTGACGCTGGTGCCCCGGGTCCTCAGGGCCCCTCTGGAGCTCCCGGGCCTCAGGGTCCTACTGGTGTGACTGGTCCTAAAGGAGCCCGAGGTGCTCAAGGCCCCCCGGGGGCCACCGGATTCCCCGGAGCTGCAGGCCGTGTCGGACCCCCAGGTTCCAATGGCAACCCTGGACCCCCCGGCCCCCCTGGTCCTTCTGGAAAAGATGGTCCCAAAGGTGCTCGAGGAGACAGCGGCCCCCCTGGCCGAGCTGGTGACCCTGGCCTCCAAGGTCCTTCCGGACCCCCTGGCGAGAAGGGAGAGCCTGGAGATGACGGTCCTTCTGGTCCCGACGGTCCTCCAGGTCCCCAGGGTCTGGCTGGTCAGAGGGGCATCGTTGGTCTGCCTGGGCAGCGTGGTGAGCGAGGATTCCCCGGCCTGCCCGGCCCATCGGGTGAGCCTGGCAAGCAGGGAGCTCCTGGAGCATCTGGAGACCGAGGCCCCCCTGGCCCCGTGGGTCCTCCCGGCCTGACTGGTCCTGCGGGTGAACCTGGACGCGAGGGAAGCCCTGGTGCTGACGGCCCCCCAGGCAGAGACGGTGCAGCTGGAGTCAAGGGCGATCGTGGTGAGACCGGTCCCGTGGGTGGCCCCGGAGCCCCAGGGCCCCCTGGCTCTCCTGGCCCCGCCGGCCCAATCGGCAAGCAGGGAGACCGAGGAGAAGCTGGTGCACAAGGCCCCATGGGACCCTCAGGACCAGCTGGAGCCCGGGGAATACCAGGTCCTCAAGGCCCTCGAGGTGACAAAGGAGAAACGGGAGAGGCTGGCGAGAGGGGACTGAAGGGACACCGTGGCTTCACTGGTCTGCAGGGTCTGCCCGGCCCCCCCGGTCCTGCTGGAGACCAAGGTACTTCTGGTCCTGCCGGTCCTTCTGGCCCCAGAGGTCCTCCTGGCCCCGTCGGTCCCTCTGGCAAAGATGGCGCTAATGGAATCCCCGGCCCCATTGGACCTCCTGGACCCCGTGGACGTTCAGGCGAAACTGGCCCTGCTGGTCCTCCTGGAAATCCTGGACCCCCTGGCCCTCCAGGTCCCCCTGGCCCTGGCATTGACATGTCCGCCTTTGCTGGCCTAGGCCAGAGAGAGAAGGGCCCCGACCCCCTGCAGTACATGCGGGCCGATGAGGCAGCCGGCAACCTGAGACAGCACGACGCCGAGGTGGATGCCACACTCAAGTCCCTCAACAACCAGATCGAGAGCATCCGCAGCCCTGAGGGATCCCGCAAGAACCCCGCTCGCACCTGCCGGGACCTGAAACTCTGCCACCCTGAGTGGAAGAGTGGAGATTACTGGATCGACCCGAACCAGGGCTGCACCCTGGACGCCATGAAGGTTTTCTGCAACATGGACACTGGCGAGACCTGCGTCTACCCCAGCCCGGCCAGCGTTCCCAAGAAGAACTGGTGGAGCAGCAAGAGCAAGGACAAGAAACACATCTGGTTCGGAGAAACCATCAACGGTGGCTTCCACTTCAGCTATGGAGATGACAACCTGGCTCCCAACACCGCCAACGTCCAGATGACCTTCCTGCGCCTGCTGTCCACCGAGGGCTCCCAGAACGTCACCTACCACTGCAAGAACAGCATCGCCTACCTGGACGAAGCCGCRGGCAACCTCAAGAAGGCCCTGCTCCTCCAGGGCTCCAACGACGTGGAGATCCGGGCTGAGGGCAACAGCAGGTTCACGTATACYGTTCTGAAGGATGGCTGCACGAAACACACCGGTAAGTGGGGCAAGACTATGATCGAGTACCGGTCGCAGAAGACCTCACGCCTCCCCATCATTGACATTGCACCCATGGACATAGGAGGGCCCGAGCAGGAATTCGGTGTGGACATAGGGCCTGTCTGCTTCTTAGACCTGAACTGGGCAGACTGCAAAATAAAATCTCGGTGTTCTATTTATTTATTGTCTTCCTGTAAGACCTTTGGGTCAAGGCAGAGGCAGGAAACTAACTGTCCTGGAGTCTGTGGGCAGGACAGAATCCTCTTTCGTAAACTTTGGCACCAAGTGGAACCCAGGGGTGAACTAGGAACAGAGACCAAG

Related Sequences

bmy_19768T0 Protein

Length: 1541 aa      
>bmy_19768T0
MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDMKDCLSPETPFGECCPICSTDLTTASGRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVAGPMGPRGPSGPPGKPGDDGEAGKAGKPGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGNPGSDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGSRGEPGGAGPAGPPGERGPPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGPRGLPGTPGTDGPKVSEAGPAGGGPLGWKGRGLRGDEDGRREGWRMRQKGVWAEEEGKERGLGAWGAQGKCCPPQIPLPPQGAAGPAGPTGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPSGPPGEKGEPGDDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGPVGGPGAPGPPGSPGPAGPIGKQGDRGEAGAQGPMGPSGPAGARGIPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLPGPPGPAGDQGTSGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGNLRQHDAEVDATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMDTGETCVYPSPASVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNVTYHCKNSIAYLDEAAGNLKKALLLQGSNDVEIRAEGNSRFTYTVLKDGCTKHTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFLDLNWADCKIKSRCSIYLLSSCKTFGSRQRQETNCPGVCGQDRILFRKLWHQVEPRGELGTETK