Sequence details bmy_18903 (Coding sequence)

Part of scaffold_1877 (Scaffold)

For more information consult the page for scaffold_1877 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PTCH1  (Minke Whale)

Gene Details

patched 1

External Links

Gene match (Identifier: BACU006707, Minke Whale)

Protein Percentage 99.04%
cDNA percentage 99.22%
Ka/Ks Ratio 0.30752 (Ka = 0.0042, Ks = 0.0136)

Additional orthologs identified in other species via the OPTIC pipeline.

PTCH1 (Human)   Ptch1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3906 bp    Location:46910..7947   Strand:-
Raw sequence 
>bmy_18903
ATGTTTAATCCTCAACTCATGATTCAGACCCCCAAGGAAGACGGTGCTAATGTCCTGACCACGGAGGCACTCCGACAGCACCTGGACTCGGCGCTCCAGGCCAGCCGGGTCCATGTATATATGTATAACAGGCAATGGAAATTGGAACATTTGTGTTATAAATCTGGAGAACTTATCACAGAAACAGGTTACATGGATCAGATAATAGAATATCTTTACCCTTGTTTAATTATTACACCTTTGGACTGCTTCTGGGAAGGGGCGAAGCTACAGTCTGGGACAGCATACCTACTAGGTAAGCCTCCTTTGCAGTGGACAAACTTTGACCCTTTGGAATTCCTAGAAGAGTTAAAGAAAATAAACTATCAAGTGGACAGCTGGGAGGAAATGCTGAATAAGGCTGAAGTTGGTCATGGTTACATGGACCGGCCCTGCCTCAATCCGGCTGATCCAGACTGCCCTGCCACAGCCCCCAACAAAAATGCAACCAAACCTCTTGATATGGCCCTTGTTTTGAATGGTGGGTGTCATGGATTATCCAGAAAGTATATGCACTGGCAGGAGGAACTGATTGTGGGTGGCACAGTCAAGAACAGCACTGGAAAGCTTGTCAGTGCCCACGCCTTGCAGACCATGTTTCAGTTAATGACTCCCAAGCAAATGTACGAACACTTCAAGGGTTATGAGTATGTCTCGCACATCAACTGGAACGAGCACAAGGCAGCAGCCATCCTGGAGGCTTGGCAGAGGACGTATGTGGAGGTAGTTCATCAAAGCGTCGCTCAGAACTCCACCCAGAAGGTGCTTTCCTTTACCACGACGACCCTGGACGACATCCTYAAGTCCTTCTCCGATGTCAGCGTCATCCGAGTGGCCAGTGGCTATTTACTGATGCTTGCCTATGCCTGTTTAACCATGCTGCGCTGGGACTGCTCCAAGTCCCAGGGTGCCGTGGGGCTGGCTGGTGTCCTGTTGGTTGCACTGTCAGTGGCTGCAGGATTGGGCCTGTGCTCATTGATCGGGATTTCCTTTAATGCTGCAACAACTCAGGTTTTGCCATTTCTTGCTCTTGGCGTTGGTGTGGATGATGTTTTCCTTCTGGCGCATGCATTTAGTGAAACAGGACAGAATAAAAGAATCCCTTTTGAGGACAGGACCGGGGAGTGTCTCAAGCGCACGGGAGCCAGCGTGGCCCTCACATCCATCAGCAACGTCACAGCCTTCTTTATGGCTGCGTTGATCCCGATTCCCGCTCTGCGGGCATTCTCCCTGCAGGCGGCTGTAGTAGTGGTATTCAATTTTGCTATGGTTCTGCTGATTTTTCCTGCAATTCTCAGCATGGATTTGTATCGACGTGAGGACAGGAGATTGGATATTTTCTGCTGTTTTACAAGCCCGTGTGTCAGCAGAGTGATTCAGGTTGAACCCCAGGCCTACACGGAGACTCACAATAACATCCGCTGCAGCCCCCCGCCCCCCTACAGCAGCCACAGCTTCGCCCACGAAACCCAGATCACCATGCAATCCACGGTGCAGCTTCGCACGGAGTACGACCCACGCACGCACGTGTACTACACCACTGCCGAGCCACGCTCCGAGATCTCCGTGCAGCCCGTCACCATGGCCCAGGACACGCTCAGCTGCCAGAGCCCCGAGAGCACCAGCTCCACGAGGGACCTGCTCTCCCAGTTCTCTGACTCTAGCCTCCACTGCCTTGAGCCCCCCTGCAGCAAGTGGACTCTCTCATCTTTTGCCAAGAAGCACTATGCCCCTTTCCTCTTGAAACCAAAAGCCAAGGTCGTGGTGATCTTCCTTTTCCTGGGCCTGCTGGGGGTCAGTCTTTATGGGACCACCCGAGTGCGTGATGGGCTGGACCTTACAGACATTGTGCCTCGGGAAACTAGAGAATATGACTTTATTGCTGCACAGTTCAAATACTTCTCTTTCTACAACATGTATATAGTCACTCAGAAAGCAGACTACCCGAATATCCAGCACTTACTTTACGACCTTCATAAGAGTTTCAGTAATGTGAAGTATGTCATGTTGGAAGAAAATAAACAGCTTCCCAAAATGTGGCTGCACTACTTCAGAGACTGGCTCCAAGGACTTCAGGATGCATTTGACAGTGACTGGGAAACTGGGAAAATCATGCCAAACAATTACAAAAATGGATCAGATGATGGGGTCCTTGCCTACAAACTCCTGGTGCAAACCGGCAGCCGTGATAAGCCCATCGACATCAGCCAGCTGACTAAACGGCGCCTGGTGGATGCAGACGGCATCATTAATCCCAACGCTTTCTACATCTACCTGACCGCTTGGGTCAGCAATGACCCCGTGGCTTACGCCGCCTCCCAAGCCAACATCCGGCCTCACCGTCCTGAGTGGGTCCACGACAAAGCCGACTACATGCCAGAAACCAGGCTGAGAATCCCAGCAGCAGAGCCCATCGAATACGCTCAGTTCCCTTTCTACCTCAACGGCTTGCGTGACACCTCAGACTTCGTTGAAGCAATTGAAAAAGTCAGAACGATCTGCAACAACTACACGAGCCTGGGGCTCTCCAGCTACCCCAACGGCTACCCCTTCCTCTTCTGGGAGCAGTACATCGGCCTCCGCCACTGGCTCCTCCTATCCATCAGCGTGGTGCTGGCCTGCACGTTCCTCGTGTGTGCTGTCTTCCTCCTGAACCCCTGGACGGCCGGGATCATTGTGACAGTCTTGGCTTTGATGACGGTCGAGCTCTTTGGCATGATGGGCCTCATTGGAATCAAGCTGAGTGCCGTGCCTGTGGTCATCTTGATCGCTTCTGTCGGCATYGGAGTGGAGTTCACTGTTCATGTTGCTCTGGCCTTTCTAACAGCCATTGGCGATAAGAACCGCAGGGCCGTGCTCGCCCTGGAGCACATGTTTGCACCTGTTCTGGATGGTGCTGTTTCCACTCTGTTAGGAGTGCTGATGCTTGCAGGATCYGAGTTTGATTTCATTGTCAGGTATTTCTTTGCTGTCCTGGCAATCCTAACAATCCTGGGTGTTCTCAATGGACTGGTTTTGCTGCCGGTCCTTTTGTCCTTCTTCGGACCGTATCCTGAGGTGTGTCCAGCCAACGGGCTGAACCGGCTGCCCACCCCTTCCCCTGAGCCGCCCCCCAGTGTGGTCCGGTTTGCTCTGCCCCCTGGTCACACGAACAACGGGTCTGATTCCTCTGACTCGGAGTACAGTTCTCAGACGACAGTGTCGGGCATCAGTGAGGAGCTTCGGCACTACGAGGCCCAGCAGGGCGCCGGGGGCCCTTCCCACCAAGTGATCGTGGAAGCCACAGAGAACCCTGTGTTCGCCCGCTCCACCGTGGTCCATCCTGAACCGAGGCAGCACCCACCCTCCAACCCTCGACAGCAGCCCCATCTGGACTCAGGGTCCCTGCCACCCGGACGGCCAGGCCAGCAGCCCAGGAGAGAAGCCCCCAGAGAATGCTTGAGGCCGCCCCCCTACAGACCGCGCAGAGACGCTTTCGAAATTTCTACTGAAGGGCATTCTGGCCCCAGCAATAGGGACCGCACGGGCCCCCRGGGAACCCGTTCTCACAACCCTCGGCACCCAGCGTTCACTGCCACGGGCAGCTCCGTGCCCAGCTACTGCCAGCCCATCACCACCGTGACGGCCTCGGCGTCCGTGACTGTTGCAGTGCACCCCCCGCCCGCCCCCGGGCCCGGGCCCGGTCGGAACCCCCGAGGGGGGCTTCGCCCGGGCTACGAGGACTACCCCGAGACTGACCACGGGCTGTTTGAGGACCCCCATGTGCCTTTTAACGTCCGTTGCGAGAGGAGGGATCCCAAGGTGGAGGTCATTGAGCTACAGGACGTGGAATGTGAGGAGAGGCGCCGGGGCAGCAGCTCCAACTGA

Related Sequences

bmy_18903T0 Protein

Length: 1302 aa      
>bmy_18903T0
MFNPQLMIQTPKEDGANVLTTEALRQHLDSALQASRVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPLQWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNATKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHALQTMFQLMTPKQMYEHFKGYEYVSHINWNEHKAAAILEAWQRTYVEVVHQSVAQNSTQKVLSFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCFTSPCVSRVIQVEPQAYTETHNNIRCSPPPPYSSHSFAHETQITMQSTVQLRTEYDPRTHVYYTTAEPRSEISVQPVTMAQDTLSCQSPESTSSTRDLLSQFSDSSLHCLEPPCSKWTLSSFAKKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHKSFSNVKYVMLEENKQLPKMWLHYFRDWLQGLQDAFDSDWETGKIMPNNYKNGSDDGVLAYKLLVQTGSRDKPIDISQLTKRRLVDADGIINPNAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICNNYTSLGLSSYPNGYPFLFWEQYIGLRHWLLLSISVVLACTFLVCAVFLLNPWTAGIIVTVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVCPANGLNRLPTPSPEPPPSVVRFALPPGHTNNGSDSSDSEYSSQTTVSGISEELRHYEAQQGAGGPSHQVIVEATENPVFARSTVVHPEPRQHPPSNPRQQPHLDSGSLPPGRPGQQPRREAPRECLRPPPYRPRRDAFEISTEGHSGPSNRDRTGPXGTRSHNPRHPAFTATGSSVPSYCQPITTVTASASVTVAVHPPPAPGPGPGRNPRGGLRPGYEDYPETDHGLFEDPHVPFNVRCERRDPKVEVIELQDVECEERRRGSSSN*