Sequence details bmy_18085 (Coding sequence)

Part of scaffold_1642 (Scaffold)

For more information consult the page for scaffold_1642 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LMO1 ENSTTRG00000016589 (Bottlenosed dolphin)

Gene Details

LIM domain only 1 (rhombotin 1)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015726, Bottlenosed dolphin)

Protein Percentage 89.22%
cDNA percentage 90.22%
Ka/Ks Ratio 0.22307 (Ka = 0.0738, Ks = 0.331)

LMO1 ENSBTAG00000016320 (Cow)

Gene Details

Rhombotin-1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000042937, Cow)

Protein Percentage 94.19%
cDNA percentage 93.98%
Ka/Ks Ratio 0.10222 (Ka = 0.0318, Ks = 0.3115)

LMO1  (Minke Whale)

Gene Details

LIM domain only 1 (rhombotin 1)

External Links

Gene match (Identifier: BACU004469, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.08%
Ka/Ks Ratio 0.001 (Ka = 0.0001, Ks = 0.0607)

Additional orthologs identified in other species via the OPTIC pipeline.

LMO1 (Human)   Lmo1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 504 bp    Location:226841..232247   Strand:+
Raw sequence 
>bmy_18085
ATGTACCTTGAGGTGGGAGCCGCAGGGCCCACCGTGTCCACTGTCTGTCCATCCGCAGGTATGCCCATGCTCTCCGTCCAGCCCAAAGGGAAGCAGAAGGGCTGCGCGGGCTGCAACCGCAAGATCAAGGACCGCTACCTGCTGAAGGCGCTGGACAAGTACTGGCACGAGGACTGCCTCAAGTGCGCCTGCTGCGACTGCCGCCTGGGCGAGGTGGGCTCCACGCTCTACACCAAGGCCAACCTCATCCTGTGCCGGCGCGACTACCTGAGGCTCTTCGGCACCACGGGAAACTGCGCCGCCTGCAGCAAGCTGATTCCAGCCTTCGAGATGGTGATGCGGGCCCGGGACAACGTATATCACCTCGACTGCTTTGCCTGCCAGCTCTGCAACCAGAGATTTTGTGTGGGAGACAAATTCTTCCTGAAGAACAACATGATCTTGTGTCAGATGGACTATGAGGAGGGGCAACTCAATGGCACCTTTGAATCCCAGGTTCAGTAA

Related Sequences

bmy_18085T0 Protein

Length: 168 aa      View alignments
>bmy_18085T0
MYLEVGAAGPTVSTVCPSAGMPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ*