Sequence details bmy_17775 (Coding sequence)

Part of scaffold_1577 (Scaffold)

For more information consult the page for scaffold_1577 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SHPRH ENSTTRG00000009951 (Bottlenosed dolphin)

Gene Details

SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000009445, Bottlenosed dolphin)

Protein Percentage 83.59%
cDNA percentage 84.31%
Ka/Ks Ratio 0.33722 (Ka = 0.0255, Ks = 0.0755)

SHPRH ENSBTAG00000008112 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000010673, Cow)

Protein Percentage 91.62%
cDNA percentage 92.26%
Ka/Ks Ratio 0.22759 (Ka = 0.0463, Ks = 0.2034)

SHPRH  (Minke Whale)

Gene Details

SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase

External Links

Gene match (Identifier: BACU003669, Minke Whale)

Protein Percentage 94.26%
cDNA percentage 95.21%
Ka/Ks Ratio 0.45199 (Ka = 0.0405, Ks = 0.0896)

Additional orthologs identified in other species via the OPTIC pipeline.

SHPRH (Human)  

Genome Location

Sequence Coding sequence

Length: 4338 bp    Location:297851..362907   Strand:+
Raw sequence 
>bmy_17775
ATGAAGCCATGCCGGACAAAGGGGGCGGGGCGCTCCTACGTGCGCGTTCACCTTGACCCCACGCTCCAGCGCGCGCCCGGCACACTTCATATTTACCAAGATAACTTGAAAATGAGCAGCCGACGGAAACGTGCTCCTCCAGTGAGGGTAGATGAGGAGAAGCAACAGCAGCTTCGTTGGAATATGCATGAGGACAGAAGGAATGAACCTCTCACCTTAACTGATGACGAGCAGTGCTGCCCAGGCTTGGACTCCTCTTCTGCTCACTGCATCATCCTAGATGATAGTCTAAAGGAAGAAGTGGCTCACAAAGATAAGAAGAGGTGTTCAGAAGTGGTGAGCGTCTCAAAATCAGTTGAAGAAGAGACTGGTGGCATTTTTTCCCCTTTGTCTCTAAAGCTGAATATTGTGATTTCTCCCTATCACTTTGATAATTCTTGGAAAGCATTTCTAGGGGAATTAACTCTTCAGCTTCTTCCTGAACAGAGTTTAATTGAAAATTTTTCTGAAAGGAGTTTTACACTGATGAGTTCAGAGTCGAGCTATCAGTTTGTGATCTATGTTCATTCAGAATGCGAAGATGTAGAGAAAAAAGAAAGAGGACTCAACGAGCCAATCAGTATTTGTGACAAAGGTATTCAAGTGGAATCATCCTTCAGTGGTGAAATGTTAGAAGATTTGGGGTGGCTGCAAAAGAAGAAAAGAATAAAACTTTACCAAAAACCAGAAGGAAATCACATTATCAAGGTTGGAATTTATCTTTTGGAAGGTGGCCTAGCAAAACTAGATTTTCTGAGTGATGCAAACTCAAGAATGAAAAAGTTCAATCAACTCATGAAGAGAGTGATGGAAAAGTTATACAATTTTATTATTCCAGATGTGTTGGAAGAGGATGAGGAAGATTCAGAGAGTGAGCCAGAGGGACAGGACATTGATGAGCTCTATCACTTTGTGAAGCGAACACATCAGCAAGAAACTCCGTCCATCCAAGTGGATGTCCAGCATCCTGCACTGACTCCTGTCATCATCCGTGAGTACCCAAATGCTGGGCCACAGTTGCTTGGTGGAATCTTAGCAGATGAGATGGGTCTCGGAAAGACAGTAGAGGTTTTGGCTCTGATTCTGACACATACTCGACAAGATGTCAAACAAGATGCTCTCACTCTTCCTGAGGGAAAAGTGGTGAATTATTTCATTCCATCACATTATTCTGGAGGAAATGTAAAAAACACAGAAACCCAGAATATGGAATTTGAACCAAAAGAAAAAGTTCAGTGCCCCCCTACACGTGTGATGATCCTGACAGCTGTTAAAGAAATGAATGGAAAAAAAGGAGTTTCCATTCTTTCCATCTACAAGTATGTCAGTTCTATATATAGATATGATGTTCAGCGGAACAGGAGTCTTCTGAAAAGGATGCTGAAATGTTTAATTTTTGAAGGTCTTGTGAAACAGATCAAAGGCCATGGTTTTTCTGGTACTTTTACACTGGGAAAGAATTACAAGGAAGAGGATATACATGATAAAACAAAAAAGCAGGCTGTGGGGAGTCCAAGGAAAATTCAGAAAGAATCCAGAAAACCAGGGAGCAAGGACACAGATTCTGAATACTTGCCATCAAACACCTCTGATGATGATGATGATCCTTACTATTATTACTATAAGGCCAGGAGAAATCGTAGTAAATTGAGGAAAAAGCCTGTTCCATCCACAAAAAAGGAAAAAAGTCAGCTTAACATCAATCTGAACTCACAGGATCACTATCCAGCTACCGGTGACTCTGCAGTTACTGATGTTACCACATCTGAAAGTACATGTGTCTTTGAAGTCAAGCAAAAACATGCAGCAAAGGACCAAGCTGAATCTCTAAATCCTGTTGGTCATGACATGCCACATTCTAATACCATGGGTCCCTATAATTCCTCCGATTATCACTTTGAGTGCATATGTGGTGAAGTTGACCAGGTAGACCATAAGCCTCGTGTTCAGTGCCTGAAATGCCACTTGTGGCAGCACGCAAAATGTGTGAATTATGAAGAGAAGAATCTGAAGATTAAACCTTTCTACTGCCCCCACTGCCTTGTTGCGATGGAGCCAGTATCAACAAGAGCAACTCTGATCATCTCCCCTAGTTCCATCTGTCATCAATGGGTGGATGAAATCAACAGACATGTGAGGTCATCATCTCTTCGGGTCTTGGTATATCAAGGAGTGAAGAAAGATGGTTTTTTACAGCCTCATTTTTTGGCGGAACAGGATATAGTCATCATTACTTACGATGTCCTTCGTTCAGAACTAAACTATGTAGATATCCCACACAGCAATAGTGAGGATGGGCGTCGCTTAAGGAACCAGAAGCGCTATATGGCCATTCCCAGCCCCCTCGTTGCTGTGGAGTGGTGGAGGATTTGCCTTGATGAAGCTCAGATGGTTGAATGTCCTACTGTAAAAGCTGCAGAAATGGCTCAGCGCTTAAGTGGGATTAACCGCTGGTGCATCAGTGGCACTCCAGTACAGAGAGGACTGGAGGGAAAAAAAAAAGAAGAAAAGCAGAATTTTGGTAGAAAGTTAAATTTCCAGGTGAAATCTTCTTTTTTCTCCTCTATCCAGATACCCCCTCAGACAGAAGAAATCCACTGGCTCCACTTTTCTCCAGTGGAAAGACATTTCTATCACCGTCAACATGAAGTGTGCTGCCAGGATGCAGTAGTAAAACTCAGGAAGATTTCTGACTGGGCTTTGAAGCTCAGCAGCCTGGACAGAAGGACTGTCACTTCCATCCTGTATCCATTGCTGAGGCTCAGGCAGGCCTGCTGCCACCCACAGGCTGTTCGTGGGGAGTTCTTGCCACTCCAGAAAAGCACCATGACAATGGAGGAACTGCTGACATCTCTGCAGAAGAAATGTGGAACTGAATGTGAAGAAGCACATCGGCAGCTAGTTTGTGCCCTCAATGGCTTAGCAGGCATCCACATCATTAAAGGTGAGTATGCCTTGGCAGCAGAACTGTACAGAGAAGTGCTGCGTTCATCTGAGGAACACAAGGGAAAGCTCAAAACTGATTCACTGCAAAGACTGCATGCTACCCATAACCTGATGGAATTGTTGATAGCCAAGCACCCAGGGATACCTCCTACCCTGAGAGATGGCACACTTGAGGAAGAGGCCAAACAGCTGCGAGAGCATTATATGAGCAAGTGTAATACGGAGGTTGCTGAAGCGCAACAAGCTTTGCTGCCGGTGCAGCAGAACATACGTGACCTCCAGAGAAAGATTTATTCTAATTCTCCTTGGTGGCTGAATGTGATACACAGAGCAATGGAATTTGGTATTGAAGAGGAACTTGTTCAAAGAGTGCGAAATGAAATAACCAGCAACTACAAGCAACAAACTGGCAAGCTTTCTATGTCAGAGAAGTTCCATGACTGCAGAGGTCTTCAGTTCTTACTTACAACACGTATGGAAGAGCTAAGTAAGTTCCAGAAGCAAGTAAGAGATGCTGTAAAAAATCTGGAGGGACCTCCATCTCGTCATGTTATTGAGTCTGCAACAATCTGCCACCTCCGGCCAATCAGGCTTCCCCTCAATTGCTGTGTCTTTTGTAAGGCTGATGAATTGTTCACAGAGTATGAATCGAAGCTATTTTCTCACACAGTCAAAGGCCAGACTGCAATATTTGAGGAGATGATAGAAGATGAAGAAGGACTGGTGGATGATCGAATACCTACCACCAGCCGGGGTCTGTGGGCAGTAAGTGAGACAGAGCGATCCATGAAAGCTCTGCTATCGTTTGGAAAATCACATAGATTTGATGTTGAATTCATTGATGAGGGAAGTGCTTCAATGGATCTCTTTGAAGCTTGGAAGAAAGAATATAAGTTGCTTCATGAATATTGGATGGCTCTGAGGAATCGTGTGTCTGCTGTTGATGAACTTGCAATGGCTACAGAACGACTAAGAGTACGTGATCCTAGGGAGCCAAAGCCCAATCCACCAGTTCCTCATATCATTGAACCACATGAGGTAGAACAAAATCGTATAAAACTACTAAATGATAAAGCTGTTGCTACATCACAGCTTCAGAAAAAACTTGGGCAGCTTCTTTACCTAACTAACTTGGAGAAGTGGGCAGTACTGACCTGTGGGCACTGTTTCTGTAATGAATGCGTTTCAATTATTATCGAACAGTACAGCGTGGGGTCTCACAGACGCTCCATTAAGTGTGCCATCTGCCGCCAGACCACATCTCATAAAGAAATCTCGTATGTCTTCACCTCAGAGAAAGCCAGCCAGGAAGAGGACATCCCTGTGAAGGTAAAGTCGGTTAAGAACATGTAG

Related Sequences

bmy_17775T0 Protein

Length: 1446 aa      View alignments
>bmy_17775T0
MKPCRTKGAGRSYVRVHLDPTLQRAPGTLHIYQDNLKMSSRRKRAPPVRVDEEKQQQLRWNMHEDRRNEPLTLTDDEQCCPGLDSSSAHCIILDDSLKEEVAHKDKKRCSEVVSVSKSVEEETGGIFSPLSLKLNIVISPYHFDNSWKAFLGELTLQLLPEQSLIENFSERSFTLMSSESSYQFVIYVHSECEDVEKKERGLNEPISICDKGIQVESSFSGEMLEDLGWLQKKKRIKLYQKPEGNHIIKVGIYLLEGGLAKLDFLSDANSRMKKFNQLMKRVMEKLYNFIIPDVLEEDEEDSESEPEGQDIDELYHFVKRTHQQETPSIQVDVQHPALTPVIIREYPNAGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPSHYSGGNVKNTETQNMEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNRSLLKRMLKCLIFEGLVKQIKGHGFSGTFTLGKNYKEEDIHDKTKKQAVGSPRKIQKESRKPGSKDTDSEYLPSNTSDDDDDPYYYYYKARRNRSKLRKKPVPSTKKEKSQLNINLNSQDHYPATGDSAVTDVTTSESTCVFEVKQKHAAKDQAESLNPVGHDMPHSNTMGPYNSSDYHFECICGEVDQVDHKPRVQCLKCHLWQHAKCVNYEEKNLKIKPFYCPHCLVAMEPVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEGKKKEEKQNFGRKLNFQVKSSFFSSIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLIAKHPGIPPTLRDGTLEEEAKQLREHYMSKCNTEVAEAQQALLPVQQNIRDLQRKIYSNSPWWLNVIHRAMEFGIEEELVQRVRNEITSNYKQQTGKLSMSEKFHDCRGLQFLLTTRMEELSKFQKQVRDAVKNLEGPPSRHVIESATICHLRPIRLPLNCCVFCKADELFTEYESKLFSHTVKGQTAIFEEMIEDEEGLVDDRIPTTSRGLWAVSETERSMKALLSFGKSHRFDVEFIDEGSASMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPVPHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKWAVLTCGHCFCNECVSIIIEQYSVGSHRRSIKCAICRQTTSHKEISYVFTSEKASQEEDIPVKVKSVKNM*