Part of scaffold_1300 (Scaffold)

For more information consult the page for scaffold_1300 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PAF1 ENSTTRG00000003558 (Bottlenosed dolphin)

Gene Details

Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003335, Bottlenosed dolphin)

Protein Percentage 99.19%
cDNA percentage 98.86%
Ka/Ks Ratio 0.07979 (Ka = 0.0034, Ks = 0.0432)

BT.97093 ENSBTAG00000020428 (Cow)

Gene Details

RNA polymerase II-associated factor 1 homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027224, Cow)

Protein Percentage 99.69%
cDNA percentage 96.3%
Ka/Ks Ratio 0.01045 (Ka = 0.0015, Ks = 0.1427)

PAF1  (Minke Whale)

Gene Details

Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)

External Links

Gene match (Identifier: BACU008314, Minke Whale)

Protein Percentage 99.6%
cDNA percentage 99.39%
Ka/Ks Ratio 0.11691 (Ka = 0.0019, Ks = 0.0165)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1488 bp    Location:469934..464933   Strand:-
>bmy_16347
ATGGCGCCCACTATCCAGACCCAGGCCCAGCGCGAGGATGGCCACAGGCCCAATTCTCATCGGACTCTGCCTGAGAGGTTCGTCCAGTACAAAGCGACTTCCTTGGAGAAACAGCACAAACATGATCTCCTGACTGAGCCAGACCTGGGAGTTACCATTGACCTCATCAACCCTGATACCTACCGCATCGACCCCAGTGTACTCCTAGATCCAGCTGATGAGAAGCTTTTGGAAGAGGAGATTCAGGCCCCCACCAGCTCCAAGAGATCCCAGCAGCATGCAAAGGTGGTGCCATGGATGCGGAAGACAGAGTACATCTCCACGGAGTTCAATCGTTACGGCATTTCCAATGAGAAGCCTGAGGTTAAGATTGGGGTTTCTGTGAAGCAGCAGTTCACTGAGGAAGAAATATACAAAGACAGGGATAGCCAGATCACAGCTATTGAGAAGACTTTTGAGGATGCCCAGAAATCCATCTCCCAGCATTACAGCAAGCCCCGAGTGACACCAGTGGAGGTCATGCCTGTCTTTCCAGATTTTAAGATGTGGATCAACCCTTGCGCTCAGGTAATCTTTGATTCAGACCCCGCCCCCAAGGACACAAGTGGTGCAGCTGCCTTGGAGATGATGTCTCAGGCCATGATCAGGGGCATGATGGATGAGGAAGGGAACCAATTTGTGGCTTACTTCCTGCCTGTGGAAGAAACACTGAAGAAACGAAAACGGGACCAGGAAGAGGAGATGGATTATGCACCAGATGACGTGTACGACTACAAGATTGCTCGGGAGTACAACTGGAATGTGAAGAACAAGGCTAGCAAGGGCTACGAGGAAAACTACTTCTTCATCTTCCGAGAGGGTGATGGGGTTTACTACAATGAGTTGGAGACCAGGGTCCGCCTGAGTAAGCGCCGAGCCAAGGCAGGGGTTCAGTCGGGTACCAATGCCCTGCTTGTGGTCAAACACCGAGACATGAATGAGAAGGAACTAGAAGCCCAGGAGGCACGGAAGGCCCAGCTGGAGAACCACGAACCCGAGGAGGAAGAAGAGGAGGAAATGGAGACGGAAGAGAAAGAAGCTGGGGGCTCAGATGAGGAACGAGAGAAGGGCAGCAGCAGTGAGAAGGAAGGCAGCGAGGATGAGCGCTCAGGCAGTGAGAGTGAACGGGAGGAGGGTGACAGGGACGAGGCGAGTGACAGGAGTGGCAGCGGTGAGGAGGAAAGCAGTGAGGATGAGGCCCGGGCTGCCAGGGACAAAGAGGAGATCTTCGGCAGTGATGCTGATTCGGAGGACGACGCTGACTCTGATGATGAGGACAGAGGACGGGCCCACGGCAGTGACAATGATTCAGACAGTGGCAGCGACGGGGCTGGCCAGCGGAGCCGGAGCGCCAGTCCCTTCCCCAGTGGCAGCGAGCATTCTGCTCAGGAGGATGGCAGTGAAGCCGCAGCTTCTGATTCCAGTGAAGCTGAAAGTGACAGTGACTGA

Related Sequences

bmy_16347T0 Protein

Length: 496 aa      View alignments
>bmy_16347T0
MAPTIQTQAQREDGHRPNSHRTLPERFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPSVLLDPADEKLLEEEIQAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEREKGSSSEKEGSEDERSGSESEREEGDRDEASDRSGSGEEESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGRAHGSDNDSDSGSDGAGQRSRSASPFPSGSEHSAQEDGSEAAASDSSEAESDSD*