Sequence details bmy_16229 (Coding sequence)

Part of scaffold_1280 (Scaffold)

For more information consult the page for scaffold_1280 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TUBE1 ENSTTRG00000003955 (Bottlenosed dolphin)

Gene Details

tubulin, epsilon 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000003720, Bottlenosed dolphin)

Protein Percentage 98.25%
cDNA percentage 98.67%
Ka/Ks Ratio 0.24336 (Ka = 0.0078, Ks = 0.0321)

TUBE1 ENSBTAG00000013837 (Cow)

Gene Details

tubulin epsilon chain

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000051291, Cow)

Protein Percentage 86.85%
cDNA percentage 88.13%
Ka/Ks Ratio 0.41599 (Ka = 0.1021, Ks = 0.2455)

TUBE1  (Minke Whale)

Gene Details

tubulin, epsilon 1

External Links

Gene match (Identifier: BACU014227, Minke Whale)

Protein Percentage 89.78%
cDNA percentage 91.19%
Ka/Ks Ratio 0.46072 (Ka = 0.0772, Ks = 0.1675)

Additional orthologs identified in other species via the OPTIC pipeline.

TUBE1 (Human)   Tube1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1206 bp    Location:555781..575005   Strand:+
Raw sequence 
>bmy_16229
ATGACCCAGTCGGTGGTCATACAGGTCGGCCAGTGCGGAAACCAGATTGGCTGCTGCTTCTGGGACCTGGCGCTGAGGGAGCACGCCGCGGTCAACCAGAAAGCAATTTATGATGAGGCAATAAGCAGCTTCTTTAGAAATGTGGATACCAGAGTGGTTGGTGATGGTGGCAGTATTTCCAAGGGGAAAATTTGTTCTTTAAAAGCACGAGCTGTCTTGATTGACATGGAGGAAGGCGTAGTAAATGAAATTCTTCAGGGACCATTGAGAGATGTATTTGATAGTAAGCAGCTCATCACTGATATTTCTGGCTCAGGGAATAATTGGGCTGTGGGTCACAAAGTGTTTGGCAGTCTTTATCAGGAACAGATTTTAGAGAAACTCAGAAAGTCAGCAGAGCACTGTGATTGTTTGCAGTGTTTTTTTGTAATACATTCCATGGGAGGAGGAACAGGATCTGGACTTGGCACATTTCTTTTAAAGGTGCTTGAGGATGAATTCCCAGAAGTATACAGATTCGTGACTTCAGTTTATCCTTCTGGTGAAGATGATGTCATAACCTCGCCTTATAATAGCATCTTGGCAATGAAGGAACTTAATGAGCATGCAGACTGTGTGTTGCCCATTGACAACCAATCTTTATTTGACATCATTAGCAAAATTGACCTCATGGTGAATTCTGGAAAGTTGGGTACAGCTATAAAGCCAAAGAGTCTGGTTACTTCAAGTGCTGGAGCTTTTAAAAAGCGGCAGGAGAAACCATTTGATGCAATGAACAACATTGTGGCAAATTTGCTGCTCAACCTAACAAGCTCTGCAAGGTTTGAAGGATCCCTTAATATGGACCTTAATGAAATCAGCATGAATTTAGTTCCTTTTCCTCAACTGCATTATCTTGTGTCAAGCCTAACACCTCTGTATACACTGGCAGATGTTAACATTCCTTCTCGAAGGTTGGATCAGATGTTTTCAGATGCCTTCAGTAAAGATCACCAGCTAATTCGAGCTGACCCCAAACATAGTCTCTACCTCGCCTGTGCCCTCATGGCTCATCTTCATCACTATCTCCAAATTGAAGGGATGGAGGAAAGCTGTTTCACAGAAGCCATGTCATCTTTATCAGCACTCATACAGGAATATAACCAACTGGATGCCACAAAAAGCATGCCTGCAGAAGATTTACCTAGACTACGCGTAGCTGTGTGA

Related Sequences

bmy_16229T0 Protein

Length: 402 aa      View alignments
>bmy_16229T0
MTQSVVIQVGQCGNQIGCCFWDLALREHAAVNQKAIYDEAISSFFRNVDTRVVGDGGSISKGKICSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGSLYQEQILEKLRKSAEHCDCLQCFFVIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSVYPSGEDDVITSPYNSILAMKELNEHADCVLPIDNQSLFDIISKIDLMVNSGKLGTAIKPKSLVTSSAGAFKKRQEKPFDAMNNIVANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLADVNIPSRRLDQMFSDAFSKDHQLIRADPKHSLYLACALMAHLHHYLQIEGMEESCFTEAMSSLSALIQEYNQLDATKSMPAEDLPRLRVAV*