Sequence detailsbmy_15596 (Coding sequence)

Part of scaffold_1183 (SequenceType object (1))

For more information consult the page for scaffold_1183 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ERCC1ENSTTRG00000008312 (Bottlenosed dolphin)

Gene Details

excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000007874, Bottlenosed dolphin)

Protein Percentage 91.28%
cDNA percentage 93.51%
Ka/Ks Ratio 0.44241 (Ka = 0.0527, Ks = 0.1192)

ERCC1ENSBTAG00000017355 (Cow)

Gene Details

DNA excision repair protein ERCC-1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000023078, Cow)

Protein Percentage 91.84%
cDNA percentage 92.74%
Ka/Ks Ratio 0.18308 (Ka = 0.0384, Ks = 0.2099)

ERCC1 (Minke Whale)

Gene Details

excision repair cross-complementation group 1

External Links

Gene match (Identifier: BACU002112, Minke Whale)

Protein Percentage 92.33%
cDNA percentage 94.98%
Ka/Ks Ratio 0.55053 (Ka = 0.0434, Ks = 0.0789)

Additional orthologs identified in other species via the OPTIC pipeline.

ERCC1 (Human)   Ercc1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1203 bp    Location:534960..517504   Strand:-
Raw sequence 
>bmy_15596
AGAGAGGCCGGAAGTGCGACCAGCCTGGGGCTCCGCTGGCCGCGCCGGCGGTGGGACGCCTCGATCTCTCTCCTGTCTTTCCTTCGCGGCCCGGGGGCGAGGAGATGGGTGTCTGGACCTGGACGCGATGGAGCCCTGGAATTTTTGGGGGGGGTACGGCTGCGTCTGGGGGTTCCTTCTGGGGAATGTCGATGCTTCGCTCGCTCCCGACGCCACGGCTTCATTTTCAGGCCCCAGAAGGACCTTGCGATGGACGAAGAGGGAGTGCAGAAGCCCGCTGGCCCACCCACAAGGAAGAAATTCCTCATTCCAGTGGACGAGGATGAGGTCCCTCCTCCCGCGGAACCACCTAAGGGCTCTGAGCAGAAGAGGAACATGATATGGCTCAGTGTGGGGAGCAGACAGTGGAAGGCCAAGCCCTTATTCAAATCCACACGGAGCCTGCGCACTGTGGAGCCCTCACCCCAGCCGGCTCCTCAGACCTACGGCGAGTACGCCATCTCAGGACCTCCAGGAGGGTCTGGAGCCACACGCCCCATAGGGCCAGAACCCCTGGCAGGAGAGACCCCCAACCAGGCCCCCAAACCAGGAGCAAAATCCAACAGCATCATTGTGAGCCCCCGGCAGAGGGGCAACCCTGTGCTGAGGTGTGTGCGCAACGTGCCCTGGGAGTTCGGCGATGTGCTTCCCGATTACGTGCTGGGCCAGAGCACCTGTGCCCTCTTCCTCAGCCTCCGTTACCACAGCCTCCACCCAGACTACATCCATCAGCGGCTGCAGAGCCTGGGGAAGAGCTTCGCCCTGCGAGTCCTGCTCGTCCAGGTGGATGTGAAAGATCCTCAGCAGGCCCTCAAGGAACTGGCTAAGATGTGCATCCTGGCCGACTGCACCCTGATCCTTGCCTGGAGCCCCGAGGAGGCCGGGCGGTACCTGGAGACATACAAGGCTTACGAGCAGAAGCCGGCGGACCTCCTGATGGAAAAGCTGGAGCAGGACTTCGTCTCCCGGGTGACTGAATGTCTGACCACCGTGAAGTCAGTCAACAAAACGGACAGTCAGACCCTCCTGACTATTTTTGGGTCTCTGGAACAGCTTATAGCTGCATCGCGGGAAGATCTGGCCTTGTGCYCAGGCCTGGGGCCCCAGAAGGCTCGAAGGTTGTTTGATGTCTTACACGAGCCCTTCATGAAAGTGCCCCGATGA

Related Sequences

bmy_15596T0 SequenceType object (3)

Length: 401 aa      View alignments
>bmy_15596T0
REAGSATSLGLRWPRRRWDASISLLSFLRGPGARRWVSGPGRDGALEFLGGVRLRLGVPSGECRCFARSRRHGFIFRPQKDLAMDEEGVQKPAGPPTRKKFLIPVDEDEVPPPAEPPKGSEQKRNMIWLSVGSRQWKAKPLFKSTRSLRTVEPSPQPAPQTYGEYAISGPPGGSGATRPIGPEPLAGETPNQAPKPGAKSNSIIVSPRQRGNPVLRCVRNVPWEFGDVLPDYVLGQSTCALFLSLRYHSLHPDYIHQRLQSLGKSFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTIFGSLEQLIAASREDLALCXGLGPQKARRLFDVLHEPFMKVPR*