Sequence details bmy_15581 (Coding sequence)

Part of scaffold_1183 (Scaffold)

For more information consult the page for scaffold_1183 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

ENSTTRG00000008710 (Bottlenosed dolphin)

Gene Details

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008254, Bottlenosed dolphin)

Protein Percentage 91.34%
cDNA percentage 95.54%
Ka/Ks Ratio 0.41585 (Ka = 0.0375, Ks = 0.0903)

APOC4 ENSBTAG00000020556 (Cow)

Gene Details

Apolipoprotein C-IV

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027391, Cow)

Protein Percentage 74.02%
cDNA percentage 84.78%
Ka/Ks Ratio 0.42805 (Ka = 0.1465, Ks = 0.3422)

APOC4  (Minke Whale)

Gene Details

apolipoprotein C-IV

External Links

Gene match (Identifier: BACU002096, Minke Whale)

Protein Percentage 78.57%
cDNA percentage 82.74%
Ka/Ks Ratio 0.34148 (Ka = 0.1572, Ks = 0.4603)

Additional orthologs identified in other species via the OPTIC pipeline.

APOC4-APOC2 (Human)   Apoc4 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 516 bp    Location:140968..143195   Strand:+
Raw sequence 
>bmy_15581
ATGTTGTTCCCTGGATGCAGGTTCCGGGCCCTGTCCTCCCTCTGCTTCTGCGTCCTGGTCCTGGCCTGCGTCGTAGCATGTCAGCAAGAAGGGCCTGGGGGAACCTCGAGCCCCCCGCCAGAGTCAGCCAGTAGTTCCTGGAGCCTGGTTCCGGGCAAGGTGAAGGAGTGGATGGAGTCGCTGGTGACCAGGACGAGAGAGAGTTGGCAGTGGTTCTGGTGCGCGTGCGCAGAACGGGGCTGCGGGCCTGAGTCTGAGGGAGGAGGGGCAGGGCCGGAACTCGTGGGTTCCCAGGGAGCAGGACAGGGCGGGGGCAGGGCTGTGACCCCTGGGTCCCAGAGGGGTAGAGGGGGCCCCAGGGCCTTCCAGGGCTTTGTGAAGACCTACTATGATGACCACCTGAGGGACCTGGGTTCCCACACCCAGGCCTGGCTCCAAAGCTCCAAGGACAGCCTCCTGAACAAGGCCTACAACCTGTGTCCCCAGCTGCTCTGCGGGGACAGCTACTGGCATTAA

Related Sequences

bmy_15581T0 Protein

Length: 172 aa      View alignments
>bmy_15581T0
MLFPGCRFRALSSLCFCVLVLACVVACQQEGPGGTSSPPPESASSSWSLVPGKVKEWMESLVTRTRESWQWFWCACAERGCGPESEGGGAGPELVGSQGAGQGGGRAVTPGSQRGRGGPRAFQGFVKTYYDDHLRDLGSHTQAWLQSSKDSLLNKAYNLCPQLLCGDSYWH*