Sequence details bmy_14503 (Coding sequence)

Part of scaffold_995 (Scaffold)

For more information consult the page for scaffold_995 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PRPF6 ENSTTRG00000013068 (Bottlenosed dolphin)

Gene Details

pre-mRNA processing factor 6

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012401, Bottlenosed dolphin)

Protein Percentage 99.26%
cDNA percentage 97.94%
Ka/Ks Ratio 0.03142 (Ka = 0.0031, Ks = 0.0997)

PRPF6 ENSBTAG00000011656 (Cow)

Gene Details

Pre-mRNA-processing factor 6

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000015480, Cow)

Protein Percentage 98.62%
cDNA percentage 93.91%
Ka/Ks Ratio 0.01867 (Ka = 0.0061, Ks = 0.3244)

PRPF6  (Minke Whale)

Gene Details

pre-mRNA processing factor 6

External Links

Gene match (Identifier: BACU011228, Minke Whale)

Protein Percentage 99.57%
cDNA percentage 98.83%
Ka/Ks Ratio 0.03161 (Ka = 0.0018, Ks = 0.056)

Additional orthologs identified in other species via the OPTIC pipeline.

PRPF6 (Human)   Prpf6 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 2940 bp    Location:479825..516311   Strand:+
Raw sequence 
>bmy_14503
CGGGTGACGCGGACCGTGATCCTTCCTGTTACAGAGCCTCGGACGTCTGTGGTTTTTCGTCTCCGGCCGCGGCCTCCATCCCTTCCCTTCTTGGCCGTCGGCGTCACCGGCGCCATGAACAAGAAGAAGAAGCCGTTCTTGGGCATGCCCGCCCCGCTCGGCTACGTGCCGGGGCTGGGCCGCGGGGCCACTGGCTTCACCACCCGCTCGGACATCGGGCCTGCCCGGGATGCCAATGATCCTGTGGATGACCGCCATGCGCCCCCAGGCAAGAGGACTGTCGGGGACCAGATGAAGAAGAGCCAGGCTGCGGATGACGATGACGAGGATCTGAATGACACCAACTATGATGAGTTTAACGGCTATGCTGGGAGCCTCTTCTCAAGTGGGCCCTACGAGAAAGATGACGAGGAAGCAGATGCTATCTATGCAGCCCTGGATAAAAGGATGGATGAAAGAAGGAAAGAGAGAAGGGAGCAAAGGGAGAAAGAAGAAATTGAGAAATACCGTATGGAGCGCCCCAAAATCCAGCAGCAGTTCTCAGATCTCAAAAGGAAGTTGGCAGAAGTCACAGAAGAAGAGTGGCTGAGCATCCCTGAGGTCGGCGACGCCAGAAACAAGCGCCAGCGGAACCCCCGCTATGAGAAGCTGACCCCTGTTCCCGACAGTTTCTTTGCCAAACATCTACAGACTGGAGAGAACCACACGTCAGTAGATCCCCGGCAGACTCAATTTGGAGGTCTGAACACACCTTATCCAGGCGGACTGAACACTCCATACCCAGGTGGGATGACACCTGGATTGATGACACCCGGCACAGGTGAGCTGGACATGAGGAAGATCGGCCAAGCCAGGAACACTTTGATGGACATGAGGCTGAGCCAGGTATCTGACTCGGTGAGTGGGCAGACTGTGGTTGACCCCAAAGGCTATCTGACAGATTTGAATTCTATGATCCCGACTCATGGAGGGGACATCAACGACATCAAGAAGGCGAGGCTGCTCCTCAAGTCTGTTCGGGAGACAAACCCTCACCACCCGCCAGCCTGGATCGCGTCGGCCCGCCTGGAGGAAGTCACTGGGAAGCTGCAGGTGGCCCGGAACCTCATCATGAAGGGGACAGAGATGTGCCCCAAGAGTGAAGATGTGTGGCTGGAAGCAGCCAGGTTGCAGCCTGGGGACACAGCCAAGGCCGTGGTGGCCCAAGCTGTCCGTCACCTCCCACAGTCCGTTAGGATTTACATCAGAGCAGCAGAGCTGGAGACAGACATCCGCGCCAAGAAGCGGGTTCTTCGAAAAGCCCTTGAGCACGTTCCAAACTCAGTTCGCTTGTGGAAGGCGGCCGTGGAGCTGGAAGAGCCCGAAGATGCTAGAATCATGCTCAGCCGAGCTGTGGAATGCTGCCCCACTAGCGTGGAGCTCTGGCTCGCCCTGGCCAGGCTAGAGACCTACGAAAACGCCCGCAAGGTCTTAAATAAGGCCCGGGAGAACATCCCTACGGACCGGCACATCTGGATCACGGCCGCCAAGCTGGAGGAGGCCAACGGGAACACGCAGATGGTGGAGAAGATCATCGACCGGGCCATCACCTCCCTGCGGGCCAACGGCGTGGAGATCAACCGCGAGCAGTGGATCCAGGATGCCGAGGAGTGTGACAAGGCTGGGAGTGTGGCCACCTGCCAGGCGGTCATGCGTGCCGTGATCGGGATTGGCATTGAGGAGGAAGACCGGAAGCACACGTGGATGGAAGACGCTGACAGCTGTGTGGCCCACAGCGCCCTGGAGTGTGCCCGAGCCATCTACGCCTACGCCCTGCAGGTCTTCCCCAGCAAGAAGAGTGTGTGGCTGCGGGCCGCGTACTTTGAGAAGAACCACGGCACCAGGGAGTCCCTGGAGGCCCTGCTGCAGCGGGCCGTGGCCCACTGCCCCAAAGCAGAGGTGCTGTGGCTCATGGGCGCCAAGTCCAAGTGGCTGGCCGGGGACGTGCCTGCGGCGAGGAGCATCCTGGCCCTGGCCTTCCAGGCTAACCCCAACAGCGAGGAGATCTGGCTGGCGGCCGTGAAGCTAGAGTCCGAGAACAACGAGTACGAGCGGGCCCGCAGGCTGCTGGCCAAGGCACGGAGCAGCGCGCCCACCGCCCGGGTGTTCATGAAGTCTGTGAAGTTGGAGTGGGTGCTGGGGAAGATCGCGGCCGCCCAGGAGCTGTGTGAAGAGGCCCTGAGGCACTACGAGGACTTCCCCAAGCTCTGGATGATGAGGGGCCAGATGGAGGAGCAGGAGGGGCTCGTGGAGAAGGCCCGGGAGGCCTACAGCCAGGGGTTGAAGAAATGTCCCCACTCCACACCCCTGTGGCTTTTGCTTTCCCGGCTGGAGGAGAAGGTTGGGCAGCTGACCCGAGCTCGGGCCATTCTGGAGAAGTCTCGCCTGAAGAACCCGAAGAACCCCGGCCTGTGGCTGGAGTCCGTGCGGCTGGAGTACCGCGCGGGGCTGAAGAACATCGCCAGCACGCTCATGGCCAAGGCGCTGCAGGAGTGCCCCAACTCCGGGGTCCTGTGGTCTGAAGCCGTCTTCCTGGAGGCGAGGCCCCAGCGGAAGACCAAGAGCGTGGATGCCCTGAAGAGGTGTGAGCACGACCCCCACGTGCTCCTGGCTGTGGCCAAGCTGTTCTGGAGTGAGCGGAAGATCACCAAGGCCCGGGAGTGGTTCCACCGCACCGTGAAGATCGACTCGGACCTGGGTGATGCCTGGGCCTTCTTCTACAAGTTCGAGCTGCAGCACGGCACGGAGGAGCAGCGGGAGGAGGTGAAAAGGCGCTGCGAGAACGCCGAGCCCCGGCACGGGGAGCTGTGGTGCGCCACGTCCAAGGACATCGCCAACTGGCAGCGGAAGATCGGGGAGATCCTGGTGCTGGTGGCAGCCTGCATCAAGAACACCTTCTGA

Related Sequences

bmy_14503T0 Protein

Length: 980 aa      View alignments
>bmy_14503T0
RVTRTVILPVTEPRTSVVFRLRPRPPSLPFLAVGVTGAMNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKSQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERREQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHSALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGKIAAAQELCEEALRHYEDFPKLWMMRGQMEEQEGLVEKAREAYSQGLKKCPHSTPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIASTLMAKALQECPNSGVLWSEAVFLEARPQRKTKSVDALKRCEHDPHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQREEVKRRCENAEPRHGELWCATSKDIANWQRKIGEILVLVAACIKNTF*