Sequence detailsbmy_14431 (Coding sequence)

Part of scaffold_988 (SequenceType object (1))

For more information consult the page for scaffold_988 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CDX1ENSBTAG00000012014 (Cow)

Gene Details

homeobox protein CDX-1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000015934, Cow)

Protein Percentage 94.64%
cDNA percentage 93.15%
Ka/Ks Ratio 0.08595 (Ka = 0.0236, Ks = 0.2752)

CDX1 (Minke Whale)

Gene Details

caudal type homeobox 1

External Links

Gene match (Identifier: BACU013116, Minke Whale)

Protein Percentage 99.12%
cDNA percentage 99.42%
Ka/Ks Ratio 0.24162 (Ka = 0.0037, Ks = 0.0152)

Additional orthologs identified in other species via the OPTIC pipeline.

CDX1 (Human)   Cdx1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 342 bp    Location:656266..655369   Strand:-
Raw sequence 
>bmy_14431
AAGACCCGGACCAAGGACAAATACCGCGTGGTCTACACCGACCACCAGCGCCTGGAGCTGGAGAAGGAATTCCACTACAGCCGTTACATCACCATACGGCGGAAATCAGAGCTGGCCGCCAATCTGGGACTCACTGAACGTCAGGTAAAGATCTGGTTCCAAAACCGGCGGGCGAAGGAGCGCAAAGTGAACAAGAAGAAGCAACAGCAGCAGCAGCAGCCTTCACAGCCACCCCCGCCAGCCCACGACGTCACCGCCACTGCAGCGGGGCCACCCCTGGGGGGCCTGTGCCCCAGCTCTGCCAGCCTCCTGGGCACCTCCTCCCCAATGCCTGTCAAGGAG

Related Sequences

bmy_14431T0 SequenceType object (3)

Length: 114 aa      
>bmy_14431T0
KTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQQPSQPPPPAHDVTATAAGPPLGGLCPSSASLLGTSSPMPVKE