Sequence detailsbmy_14427 (Coding sequence)

Part of scaffold_988 (SequenceType object (1))

For more information consult the page for scaffold_988 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TCOF1ENSTTRG00000013022 (Bottlenosed dolphin)

Gene Details

Treacher Collins-Franceschetti syndrome 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000012360, Bottlenosed dolphin)

Protein Percentage 86.75%
cDNA percentage 88.48%
Ka/Ks Ratio 0.44598 (Ka = 0.0343, Ks = 0.0768)

TCOF1ENSBTAG00000015224 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000020259, Cow)

Protein Percentage 74.52%
cDNA percentage 82.05%
Ka/Ks Ratio 0.58332 (Ka = 0.1827, Ks = 0.3132)

Additional orthologs identified in other species via the OPTIC pipeline.

TCOF1 (Human)   Tcof1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 4539 bp    Location:490259..452381   Strand:-
Raw sequence 
>bmy_14427
ATGGCCGAGGCCAGGAAGCGGCGGGAGCTGCTTCCCCTGATCTACCAGCATCTGCTGCAGGCGGGCTTTGTGCGCGCGGCGCGGGAAGTGAAGGAGCAGAGCGGCCAGAAAAGTTTCCTGACTCAGCCTGTAACCCTTCTGGACATCTATACACACTGGCAACAAACCTCGGAGATTGGCCAGAAGCAGAAGGCAGAGGAAGATGCAGCCCTGCAGGCCAAGAAGACCCGCGTGTCAGACCCCATTAGCAGCTCAGAGAGCTCAGAAGAGGAGGAGGAGGAGCAGGAGGCAGAAGCGGAAACCACCAAAGCCATCCCGGCACTAGCATCTACCAACTCCTCAGCCACGGGGAAGGTTTTGCCTTCAAGTGTGAAAGAAAAAGCCAAGGCAGTGGCCCACCTCCTCACCAGGAAGTCACCCCAGAAGGCTGCAGGGCCCTCGGCAAATACCATCCTGGTCTCAGAAACTGAGGAGGAGGGCAGTGTCTCGGCCCTCAGAACCACTGCCAAGCCTGGAATGGCGGCCRCCAGCCAGGCCGCCAGCTCCAGCGAGGACACCTCCAGCTCGAGCGATGAGACGGACGTGGAGGTCAAAGCCTCAGCAGCTGTGGCCAAGGAGTCTCCAAGGAGAAGGGCAGCCCCGACCCCAGGGAAGGCGGGATGTGTGACACCCCAAGTCAGAGGGGGTGCCATGACCCCAGCCAGCAGGGCCAAGAAGCCAGAAGAGGTCTCAGAGAGCAGCGAGGAGTCCGAGAGTGAGGAGGGGGCCCCTGCGGGGACACCCAGCCAGGTGAAGGCCTCCGAGAAAACTGTCCAGGTCAGAGCTGCCTCGGGTCCTGCCAAGGGGACCCCTGGGAAAGGGGCCACCCCAGCACCCCCTGGGAAGGCAGGGAGGCCAGAGGAGGACTCGGAGAGCAGCAGCGAGGAGTCGGACAGCGAGGAGGAGGCGCCAGCTGCCCAGACTCTGCTGCAGGCAAAGCCCTCAGGGAAGATCCCCCAGGTCAGAGCCACCTCAGCAGCACCTGCCCAGGTGCTCTCCCCTGGGAAAGGGGCCCCTCCAGCACCCCCTGGCAAGGCAGGGCCTGCAGCCATCCAGGCCCAGACCAGGGGGCAGGAGGAGGACTCAGAGAGCAGCAGCGAGGAGTCAGACAGCGAGGGGGAGGCGTCCACAGCCGTGCCCCAAACCGCGAGCCTGGCTCAGGTGAGGCTGGAGGGATGCCCGGCCCGGCCCTGTGCATCGCCTGCAGATACCCTGTGGGCCTCTCCTCCTCTGCACCCGGAACCGCTGCCCTCCATCCGCCCTCCTCACCTCCTGTCTTACCTCACACATTCCCCCCAAGCCCCCTATCCTGACCCTGTCCTTCGTCACTCCCAGGCAAAGCCCTCGGGAAAAAACTCCCAGGTCAGAACTGCCTCAGCCACAAGCACGGGGCCCTCAGCGAAGAGTGCTGTCCCAGCGCTCCCTCGGAAGGCAAGGGCTGTAGCCGCCCAGGTGGCAAAGTGGGATGCGGACTCGGAGAGCAGCAATGAGGAGGAGTCGGACAGCGAGGGGGAGGCGCTGAGGGCAGCGGCCTTGGCCCAGGCAAAGTCCTCGGGGAAAGTCCTGCAGGTCAGACCTGCCTCAGGTCCCACCCAGGGCCCCCCTCAGAAGGCCGGGCCTGCAGCCGCCCAGGTCAAGACTGAAAGGTCCAAGGAAGACTCGGAGAGCAGTGAGGAGGAGTCAGACAGTGAGGACGAGGCCCCCGCAGCCAAGACTCCAGCCCAGGCAAAATCAGCTGTGAAAACTTCTCAGACCAAGGTCTCCCCAAGGAAGGGCACCCCTATTACACCCGCATCTGCCAAGGCCCCACCAGTGCAAGTAAGCGCACCAGCCCCCTGGAAAGCAGGAACGGTGACTTYGCCAACCCGCACATCATCCCCAGCGGTGGTCAGGGGCACCCAGAGGCCAGAGGAGGACTCTTCAAGCAGCGAGGAGCCGGAGAGCGAGGAGGAGACAGCTCCCGCCGCCTCAGTGGGACAGGTGAAGTCTGTAGGGAAAAGCCTCCCAGTGAAAGCTGCCTCGGCACCCACCAAGGGGCCCTCAGGGGCACGGACCACCCCGGGGCTCGCTGGGAAGGCAGGGCCTGCAGTGACCCAGGTCAAAGCTGAGGTGCAGGAAGACTCAGAGAGCAGTGAGGAAGAGTCGGACAATGAGGAGGCGGCCTCAACTGCAGCACAGGTAAAGCCACCAGCAAGAGCCCCCCAGAGCAGTGCCGTCTCGGGCAGGGGCCAGGGGTCCCCCAGGAAAGGGGCGGCCCCAGCACCCCCTGGGAAGGCAGGACCCCCAGCCGCCCAGGCCGGGAAGCGGGAAGAGGACTCGGAGAGCAGCAGCGAGGAGGAGTCAGACAGTGACGGGGAGACGCCGGCAGCTGTGCCCCCAGCCCAGGTGATTAAAACCCCTCTGATTTTTGTCGACCCTAATCGTAGTCCAGCTGGCCCAGCTGCTACCCCCGCCCAAGCCCAGGCTACAAGCACCCCGAGGAAGGCCCAGGCCTCAGAGAGCACACCCAAGAGCTCCTCTGAGAGTGAGGATGAGGACGTGATCCCTGCTACGCAGTGCTCGACTCCTGCCATTAGGACCAGCGTGGCGASTGTGCCCACGGCCCACCCCAGGGCAGCCCTCAGAGCCAGCATGGTGGGGGCCGGCAGCAGTGAGGACACCAGTCGGGCGTCTGAAGGCAAGAAACAGGAGACGCCAGCCTCTCAGGTGACAAAGAGGAACCCAGCTCACCTCCCGCTGACCCAGGCTGCCCTGAAGGTCCTTGCCCAGAAAGCCAGTGAGGCCCAGCCTCCTGCTGCCAGGACCCCTCCCCAGAGCACCCCCGCGCAGGCCAGAGGGGCCAACAAGCTCAGAAAGCCTGAGGTTCCTGCAACCCAGCGGGCCATAGCCACTCCCTCGGGACGCCCCAAGGCCAAGGCCTCTGGCACCTCAGGTGACAGCAAGGACAGCAGTGGCAGCTCTTCAGGGAGTGAAGAAGATGCTGAGGGGCCCCAGGATACCTGTGCTTCTCCAGTAGGCCCCGCCCCCTCCAGGAGGGAGACCTTGGTGGAAGAGACCACAGCGGAGTCCAGCGATGATGAGGTGGTGGCACCCTCCCAGTCTCTCCTCTCAGGTTATGTGACCCCTGGGCTGACTCCGGCCAGTTCCCAGGCTTCAAAGGCCACTCCCAAGCCAGACCCCAACCCCTCGGTTTCCTCTACTCCGGCCACCAGACATGCCCCAGACGGCAAGCAGGAAGTGGAGCCCCAACAAGCAGCAGGCACCATGTCCCCTAAAACAGGCAGAAGAGAGGCTAGCGCCACACCTCAGAAGCCCCAGAAGCCCGGGAAGGGGCCCAGGAGCCCCCAGGCCTCCATGCTGGCGCTGCAGAGCGGCATCACCCGGCGCCTGCTGAGCGAGCCCTGGCCCCTGAGCGAGGCGCAGGTGCAGGCCTCGGTGGTGAAGGTGTTGGCGGAGCTGCTGGAGCAGGAGAAGAAGAAGGCCGTGGACGCCGCCAAGGAGGGCAGCCGGGAGGGCAGCCAGAAGGGCCGCCTGGGCAACAAGCGGAAGCTCTCTGAAGACCAGACAGCCGCCGGTGCCCCCAGGAGCAAGAAGAAGAAGCAGCTGGCGGCCGGGGATGGCGGGGARCGTGTGGTCTCCCCAGAAAAGGCCCCCAGGACTTCCAAGGGGAAATCCAAGAGGGACAAAGCAAGTGGTGACATCAAGGAGAAGAAGGAGAAGGAGTCTCCCGGCTCCCAAGGGGCCAAGGAGAAGCCAGAAGGGGAGCCGGGGAAGGTGAAGGGTGAGGGAGGAGACCAAGGCAACCCAAAGAGCAAGAAGGAGAAGAAGAAATCCGACAAGAAAAAAAAAGACAAGGAAAAAAAAGAAAAGAAGAAGAAAGCAAAAAAGGCCTCAACCAAAGATCCTGACTCACCATTGCAGAAGAAAAAGAAGAAAAAGGGGGCCCTCAGCGCCTTATACTCAGGCGCAGTTCTCACCGTGGCCAGCAGGGCTTCAGCTGTGGTCAGAAAAGCTGAGCATCTGCTGCTGCAAAGTCCTGAGCTCCTTCCTCCAGGGCACACGGGGCGCCATCCCTACCCTCGGGATCTCTATATGCCCAAAATCTGTTCTGGGGGAGCCACGAATCCTCAGGAGACAACTGTCACATCCCCTCCTGGTGGGGGCAGCGTGGGTGGGGAGATGCTTCAGGTACAGGAGCCTCTCATACGTACTTCTCTCTTCACAGAAGAAGACGGCAGAGCAGACTGTCTGAGGGACACCAGGCGGCAGGTGCACTTCCTGACCCGGGAACCCCTGCTGACCATCTGCTCCCTGGGGAGGGTGGGAGGGCAGGCCCAGCATTCACTGTGGTTCCGGGGAGACTGGGCTTCGTGGGTAGGCCCTGAGGGGAAGGGGGTTTGGAGAAAGAGGTTGCATTCCTCAGGGTCAGTGGGTGATGCCGGGAACCAGAGCTGTAGAATCAGAAGTGTCCGGGACAGTCCTGGCAGTGACCAACACTGA

Related Sequences

bmy_14427T0 SequenceType object (3)

Length: 1513 aa      View alignments
>bmy_14427T0
MAEARKRRELLPLIYQHLLQAGFVRAAREVKEQSGQKSFLTQPVTLLDIYTHWQQTSEIGQKQKAEEDAALQAKKTRVSDPISSSESSEEEEEEQEAEAETTKAIPALASTNSSATGKVLPSSVKEKAKAVAHLLTRKSPQKAAGPSANTILVSETEEEGSVSALRTTAKPGMAAXSQAASSSEDTSSSSDETDVEVKASAAVAKESPRRRAAPTPGKAGCVTPQVRGGAMTPASRAKKPEEVSESSEESESEEGAPAGTPSQVKASEKTVQVRAASGPAKGTPGKGATPAPPGKAGRPEEDSESSSEESDSEEEAPAAQTLLQAKPSGKIPQVRATSAAPAQVLSPGKGAPPAPPGKAGPAAIQAQTRGQEEDSESSSEESDSEGEASTAVPQTASLAQVRLEGCPARPCASPADTLWASPPLHPEPLPSIRPPHLLSYLTHSPQAPYPDPVLRHSQAKPSGKNSQVRTASATSTGPSAKSAVPALPRKARAVAAQVAKWDADSESSNEEESDSEGEALRAAALAQAKSSGKVLQVRPASGPTQGPPQKAGPAAAQVKTERSKEDSESSEEESDSEDEAPAAKTPAQAKSAVKTSQTKVSPRKGTPITPASAKAPPVQVSAPAPWKAGTVTXPTRTSSPAVVRGTQRPEEDSSSSEEPESEEETAPAASVGQVKSVGKSLPVKAASAPTKGPSGARTTPGLAGKAGPAVTQVKAEVQEDSESSEEESDNEEAASTAAQVKPPARAPQSSAVSGRGQGSPRKGAAPAPPGKAGPPAAQAGKREEDSESSSEEESDSDGETPAAVPPAQVIKTPLIFVDPNRSPAGPAATPAQAQATSTPRKAQASESTPKSSSESEDEDVIPATQCSTPAIRTSVAXVPTAHPRAALRASMVGAGSSEDTSRASEGKKQETPASQVTKRNPAHLPLTQAALKVLAQKASEAQPPAARTPPQSTPAQARGANKLRKPEVPATQRAIATPSGRPKAKASGTSGDSKDSSGSSSGSEEDAEGPQDTCASPVGPAPSRRETLVEETTAESSDDEVVAPSQSLLSGYVTPGLTPASSQASKATPKPDPNPSVSSTPATRHAPDGKQEVEPQQAAGTMSPKTGRREASATPQKPQKPGKGPRSPQASMLALQSGITRRLLSEPWPLSEAQVQASVVKVLAELLEQEKKKAVDAAKEGSREGSQKGRLGNKRKLSEDQTAAGAPRSKKKKQLAAGDGGERVVSPEKAPRTSKGKSKRDKASGDIKEKKEKESPGSQGAKEKPEGEPGKVKGEGGDQGNPKSKKEKKKSDKKKKDKEKKEKKKKAKKASTKDPDSPLQKKKKKKGALSALYSGAVLTVASRASAVVRKAEHLLLQSPELLPPGHTGRHPYPRDLYMPKICSGGATNPQETTVTSPPGGGSVGGEMLQVQEPLIRTSLFTEEDGRADCLRDTRRQVHFLTREPLLTICSLGRVGGQAQHSLWFRGDWASWVGPEGKGVWRKRLHSSGSVGDAGNQSCRIRSVRDSPGSDQH*