Part of scaffold_988 (Scaffold)

For more information consult the page for scaffold_988 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TCOF1 ENSTTRG00000013022 (Bottlenosed dolphin)

Gene Details

Treacher Collins-Franceschetti syndrome 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012360, Bottlenosed dolphin)

Protein Percentage 86.75%
cDNA percentage 88.48%
Ka/Ks Ratio 0.44598 (Ka = 0.0343, Ks = 0.0768)

TCOF1 ENSBTAG00000015224 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000020259, Cow)

Protein Percentage 74.52%
cDNA percentage 82.05%
Ka/Ks Ratio 0.58332 (Ka = 0.1827, Ks = 0.3132)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 4539 bp    Location:490259..452381   Strand:-
>bmy_14427
ATGGCCGAGGCCAGGAAGCGGCGGGAGCTGCTTCCCCTGATCTACCAGCATCTGCTGCAGGCGGGCTTTGTGCGCGCGGCGCGGGAAGTGAAGGAGCAGAGCGGCCAGAAAAGTTTCCTGACTCAGCCTGTAACCCTTCTGGACATCTATACACACTGGCAACAAACCTCGGAGATTGGCCAGAAGCAGAAGGCAGAGGAAGATGCAGCCCTGCAGGCCAAGAAGACCCGCGTGTCAGACCCCATTAGCAGCTCAGAGAGCTCAGAAGAGGAGGAGGAGGAGCAGGAGGCAGAAGCGGAAACCACCAAAGCCATCCCGGCACTAGCATCTACCAACTCCTCAGCCACGGGGAAGGTTTTGCCTTCAAGTGTGAAAGAAAAAGCCAAGGCAGTGGCCCACCTCCTCACCAGGAAGTCACCCCAGAAGGCTGCAGGGCCCTCGGCAAATACCATCCTGGTCTCAGAAACTGAGGAGGAGGGCAGTGTCTCGGCCCTCAGAACCACTGCCAAGCCTGGAATGGCGGCCRCCAGCCAGGCCGCCAGCTCCAGCGAGGACACCTCCAGCTCGAGCGATGAGACGGACGTGGAGGTCAAAGCCTCAGCAGCTGTGGCCAAGGAGTCTCCAAGGAGAAGGGCAGCCCCGACCCCAGGGAAGGCGGGATGTGTGACACCCCAAGTCAGAGGGGGTGCCATGACCCCAGCCAGCAGGGCCAAGAAGCCAGAAGAGGTCTCAGAGAGCAGCGAGGAGTCCGAGAGTGAGGAGGGGGCCCCTGCGGGGACACCCAGCCAGGTGAAGGCCTCCGAGAAAACTGTCCAGGTCAGAGCTGCCTCGGGTCCTGCCAAGGGGACCCCTGGGAAAGGGGCCACCCCAGCACCCCCTGGGAAGGCAGGGAGGCCAGAGGAGGACTCGGAGAGCAGCAGCGAGGAGTCGGACAGCGAGGAGGAGGCGCCAGCTGCCCAGACTCTGCTGCAGGCAAAGCCCTCAGGGAAGATCCCCCAGGTCAGAGCCACCTCAGCAGCACCTGCCCAGGTGCTCTCCCCTGGGAAAGGGGCCCCTCCAGCACCCCCTGGCAAGGCAGGGCCTGCAGCCATCCAGGCCCAGACCAGGGGGCAGGAGGAGGACTCAGAGAGCAGCAGCGAGGAGTCAGACAGCGAGGGGGAGGCGTCCACAGCCGTGCCCCAAACCGCGAGCCTGGCTCAGGTGAGGCTGGAGGGATGCCCGGCCCGGCCCTGTGCATCGCCTGCAGATACCCTGTGGGCCTCTCCTCCTCTGCACCCGGAACCGCTGCCCTCCATCCGCCCTCCTCACCTCCTGTCTTACCTCACACATTCCCCCCAAGCCCCCTATCCTGACCCTGTCCTTCGTCACTCCCAGGCAAAGCCCTCGGGAAAAAACTCCCAGGTCAGAACTGCCTCAGCCACAAGCACGGGGCCCTCAGCGAAGAGTGCTGTCCCAGCGCTCCCTCGGAAGGCAAGGGCTGTAGCCGCCCAGGTGGCAAAGTGGGATGCGGACTCGGAGAGCAGCAATGAGGAGGAGTCGGACAGCGAGGGGGAGGCGCTGAGGGCAGCGGCCTTGGCCCAGGCAAAGTCCTCGGGGAAAGTCCTGCAGGTCAGACCTGCCTCAGGTCCCACCCAGGGCCCCCCTCAGAAGGCCGGGCCTGCAGCCGCCCAGGTCAAGACTGAAAGGTCCAAGGAAGACTCGGAGAGCAGTGAGGAGGAGTCAGACAGTGAGGACGAGGCCCCCGCAGCCAAGACTCCAGCCCAGGCAAAATCAGCTGTGAAAACTTCTCAGACCAAGGTCTCCCCAAGGAAGGGCACCCCTATTACACCCGCATCTGCCAAGGCCCCACCAGTGCAAGTAAGCGCACCAGCCCCCTGGAAAGCAGGAACGGTGACTTYGCCAACCCGCACATCATCCCCAGCGGTGGTCAGGGGCACCCAGAGGCCAGAGGAGGACTCTTCAAGCAGCGAGGAGCCGGAGAGCGAGGAGGAGACAGCTCCCGCCGCCTCAGTGGGACAGGTGAAGTCTGTAGGGAAAAGCCTCCCAGTGAAAGCTGCCTCGGCACCCACCAAGGGGCCCTCAGGGGCACGGACCACCCCGGGGCTCGCTGGGAAGGCAGGGCCTGCAGTGACCCAGGTCAAAGCTGAGGTGCAGGAAGACTCAGAGAGCAGTGAGGAAGAGTCGGACAATGAGGAGGCGGCCTCAACTGCAGCACAGGTAAAGCCACCAGCAAGAGCCCCCCAGAGCAGTGCCGTCTCGGGCAGGGGCCAGGGGTCCCCCAGGAAAGGGGCGGCCCCAGCACCCCCTGGGAAGGCAGGACCCCCAGCCGCCCAGGCCGGGAAGCGGGAAGAGGACTCGGAGAGCAGCAGCGAGGAGGAGTCAGACAGTGACGGGGAGACGCCGGCAGCTGTGCCCCCAGCCCAGGTGATTAAAACCCCTCTGATTTTTGTCGACCCTAATCGTAGTCCAGCTGGCCCAGCTGCTACCCCCGCCCAAGCCCAGGCTACAAGCACCCCGAGGAAGGCCCAGGCCTCAGAGAGCACACCCAAGAGCTCCTCTGAGAGTGAGGATGAGGACGTGATCCCTGCTACGCAGTGCTCGACTCCTGCCATTAGGACCAGCGTGGCGASTGTGCCCACGGCCCACCCCAGGGCAGCCCTCAGAGCCAGCATGGTGGGGGCCGGCAGCAGTGAGGACACCAGTCGGGCGTCTGAAGGCAAGAAACAGGAGACGCCAGCCTCTCAGGTGACAAAGAGGAACCCAGCTCACCTCCCGCTGACCCAGGCTGCCCTGAAGGTCCTTGCCCAGAAAGCCAGTGAGGCCCAGCCTCCTGCTGCCAGGACCCCTCCCCAGAGCACCCCCGCGCAGGCCAGAGGGGCCAACAAGCTCAGAAAGCCTGAGGTTCCTGCAACCCAGCGGGCCATAGCCACTCCCTCGGGACGCCCCAAGGCCAAGGCCTCTGGCACCTCAGGTGACAGCAAGGACAGCAGTGGCAGCTCTTCAGGGAGTGAAGAAGATGCTGAGGGGCCCCAGGATACCTGTGCTTCTCCAGTAGGCCCCGCCCCCTCCAGGAGGGAGACCTTGGTGGAAGAGACCACAGCGGAGTCCAGCGATGATGAGGTGGTGGCACCCTCCCAGTCTCTCCTCTCAGGTTATGTGACCCCTGGGCTGACTCCGGCCAGTTCCCAGGCTTCAAAGGCCACTCCCAAGCCAGACCCCAACCCCTCGGTTTCCTCTACTCCGGCCACCAGACATGCCCCAGACGGCAAGCAGGAAGTGGAGCCCCAACAAGCAGCAGGCACCATGTCCCCTAAAACAGGCAGAAGAGAGGCTAGCGCCACACCTCAGAAGCCCCAGAAGCCCGGGAAGGGGCCCAGGAGCCCCCAGGCCTCCATGCTGGCGCTGCAGAGCGGCATCACCCGGCGCCTGCTGAGCGAGCCCTGGCCCCTGAGCGAGGCGCAGGTGCAGGCCTCGGTGGTGAAGGTGTTGGCGGAGCTGCTGGAGCAGGAGAAGAAGAAGGCCGTGGACGCCGCCAAGGAGGGCAGCCGGGAGGGCAGCCAGAAGGGCCGCCTGGGCAACAAGCGGAAGCTCTCTGAAGACCAGACAGCCGCCGGTGCCCCCAGGAGCAAGAAGAAGAAGCAGCTGGCGGCCGGGGATGGCGGGGARCGTGTGGTCTCCCCAGAAAAGGCCCCCAGGACTTCCAAGGGGAAATCCAAGAGGGACAAAGCAAGTGGTGACATCAAGGAGAAGAAGGAGAAGGAGTCTCCCGGCTCCCAAGGGGCCAAGGAGAAGCCAGAAGGGGAGCCGGGGAAGGTGAAGGGTGAGGGAGGAGACCAAGGCAACCCAAAGAGCAAGAAGGAGAAGAAGAAATCCGACAAGAAAAAAAAAGACAAGGAAAAAAAAGAAAAGAAGAAGAAAGCAAAAAAGGCCTCAACCAAAGATCCTGACTCACCATTGCAGAAGAAAAAGAAGAAAAAGGGGGCCCTCAGCGCCTTATACTCAGGCGCAGTTCTCACCGTGGCCAGCAGGGCTTCAGCTGTGGTCAGAAAAGCTGAGCATCTGCTGCTGCAAAGTCCTGAGCTCCTTCCTCCAGGGCACACGGGGCGCCATCCCTACCCTCGGGATCTCTATATGCCCAAAATCTGTTCTGGGGGAGCCACGAATCCTCAGGAGACAACTGTCACATCCCCTCCTGGTGGGGGCAGCGTGGGTGGGGAGATGCTTCAGGTACAGGAGCCTCTCATACGTACTTCTCTCTTCACAGAAGAAGACGGCAGAGCAGACTGTCTGAGGGACACCAGGCGGCAGGTGCACTTCCTGACCCGGGAACCCCTGCTGACCATCTGCTCCCTGGGGAGGGTGGGAGGGCAGGCCCAGCATTCACTGTGGTTCCGGGGAGACTGGGCTTCGTGGGTAGGCCCTGAGGGGAAGGGGGTTTGGAGAAAGAGGTTGCATTCCTCAGGGTCAGTGGGTGATGCCGGGAACCAGAGCTGTAGAATCAGAAGTGTCCGGGACAGTCCTGGCAGTGACCAACACTGA

Related Sequences

bmy_14427T0 Protein

Length: 1513 aa      View alignments
>bmy_14427T0
MAEARKRRELLPLIYQHLLQAGFVRAAREVKEQSGQKSFLTQPVTLLDIYTHWQQTSEIGQKQKAEEDAALQAKKTRVSDPISSSESSEEEEEEQEAEAETTKAIPALASTNSSATGKVLPSSVKEKAKAVAHLLTRKSPQKAAGPSANTILVSETEEEGSVSALRTTAKPGMAAXSQAASSSEDTSSSSDETDVEVKASAAVAKESPRRRAAPTPGKAGCVTPQVRGGAMTPASRAKKPEEVSESSEESESEEGAPAGTPSQVKASEKTVQVRAASGPAKGTPGKGATPAPPGKAGRPEEDSESSSEESDSEEEAPAAQTLLQAKPSGKIPQVRATSAAPAQVLSPGKGAPPAPPGKAGPAAIQAQTRGQEEDSESSSEESDSEGEASTAVPQTASLAQVRLEGCPARPCASPADTLWASPPLHPEPLPSIRPPHLLSYLTHSPQAPYPDPVLRHSQAKPSGKNSQVRTASATSTGPSAKSAVPALPRKARAVAAQVAKWDADSESSNEEESDSEGEALRAAALAQAKSSGKVLQVRPASGPTQGPPQKAGPAAAQVKTERSKEDSESSEEESDSEDEAPAAKTPAQAKSAVKTSQTKVSPRKGTPITPASAKAPPVQVSAPAPWKAGTVTXPTRTSSPAVVRGTQRPEEDSSSSEEPESEEETAPAASVGQVKSVGKSLPVKAASAPTKGPSGARTTPGLAGKAGPAVTQVKAEVQEDSESSEEESDNEEAASTAAQVKPPARAPQSSAVSGRGQGSPRKGAAPAPPGKAGPPAAQAGKREEDSESSSEEESDSDGETPAAVPPAQVIKTPLIFVDPNRSPAGPAATPAQAQATSTPRKAQASESTPKSSSESEDEDVIPATQCSTPAIRTSVAXVPTAHPRAALRASMVGAGSSEDTSRASEGKKQETPASQVTKRNPAHLPLTQAALKVLAQKASEAQPPAARTPPQSTPAQARGANKLRKPEVPATQRAIATPSGRPKAKASGTSGDSKDSSGSSSGSEEDAEGPQDTCASPVGPAPSRRETLVEETTAESSDDEVVAPSQSLLSGYVTPGLTPASSQASKATPKPDPNPSVSSTPATRHAPDGKQEVEPQQAAGTMSPKTGRREASATPQKPQKPGKGPRSPQASMLALQSGITRRLLSEPWPLSEAQVQASVVKVLAELLEQEKKKAVDAAKEGSREGSQKGRLGNKRKLSEDQTAAGAPRSKKKKQLAAGDGGERVVSPEKAPRTSKGKSKRDKASGDIKEKKEKESPGSQGAKEKPEGEPGKVKGEGGDQGNPKSKKEKKKSDKKKKDKEKKEKKKKAKKASTKDPDSPLQKKKKKKGALSALYSGAVLTVASRASAVVRKAEHLLLQSPELLPPGHTGRHPYPRDLYMPKICSGGATNPQETTVTSPPGGGSVGGEMLQVQEPLIRTSLFTEEDGRADCLRDTRRQVHFLTREPLLTICSLGRVGGQAQHSLWFRGDWASWVGPEGKGVWRKRLHSSGSVGDAGNQSCRIRSVRDSPGSDQH*