Part of scaffold_961 (Scaffold)

For more information consult the page for scaffold_961 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HLA-DOA ENSTTRG00000004282 (Bottlenosed dolphin)

Gene Details

major histocompatibility complex, class II, DO alpha

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004028, Bottlenosed dolphin)

Protein Percentage 97.2%
cDNA percentage 98.13%
Ka/Ks Ratio 0.32395 (Ka = 0.0138, Ks = 0.0425)

HLA-DOA ENSBTAG00000006490 (Cow)

Gene Details

HLA class II histocompatibility antigen, DO alpha chain precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000008504, Cow)

Protein Percentage 82.2%
cDNA percentage 86.72%
Ka/Ks Ratio 0.23221 (Ka = 0.0979, Ks = 0.4216)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 756 bp    Location:148138..121939   Strand:-
>bmy_14319
ATGGTCCTCAGTGGGGGGCTGGTCCTGGGACTCCACACCTTGATGACCCTCCTGAGCCCCCAGGAAGCTGGGGCCATCAAGGCTGACCACATGGGCTCCTACGGACCAGCCTTCTACCAGTCCTATGATGGCTCGGGTCAGTTCACCCATGATTTCGATGGAGAGCAGCTGTTCTCTGTGGACCTGAAGAAGAGGGAGGCTGTGTGGCGTCTGCCTGAATTTGGCAACTTCGCCTACTTTGACCCGCAGAGTGGGCTGGCCAGTATCACGATGATCAAAGTGCATCTGGACGTCTTGGTGGAGCGCTCGAACCGTACCAGAGCCGCCAACGTGCCCCCAAGAGTGACTGTGCTGCCCAAGTCTCACGTGGAGCTGGGCCAGCCCAACGTCCTCATCTGCATCGTGGAGAACATCTTCCCCCCTGTCATCAATATCACCTGGCTGCGCAACGGTCAGACCATCACCGAGGGGGTGGCCCAGACCAGCTTCTATGCCCAGCCCGACCATCTGTTCCGGAAGTTCCACTACTTGCCCTTTGTGCCCTCGGTGGACGACTTCTATGACTGCAAGGTGGAGCACTGGGGACTGGACGAGCCGCTCTTTAAGCACTGGGAGCCCCAGGTGCCTACCCTGCTGCCTGACACCACAGAGACCCTGGTCTTCACCCTCGGTCTGGCCCTTGGCCTGGCCGGCTTCCTCGTGGGCGTCACCCTCATCATCACAGGCACATGCCTGTCCAGCACCCCCAGGGTGTAA

Related Sequences

bmy_14319T0 Protein

Length: 252 aa      View alignments
>bmy_14319T0
MVLSGGLVLGLHTLMTLLSPQEAGAIKADHMGSYGPAFYQSYDGSGQFTHDFDGEQLFSVDLKKREAVWRLPEFGNFAYFDPQSGLASITMIKVHLDVLVERSNRTRAANVPPRVTVLPKSHVELGQPNVLICIVENIFPPVINITWLRNGQTITEGVAQTSFYAQPDHLFRKFHYLPFVPSVDDFYDCKVEHWGLDEPLFKHWEPQVPTLLPDTTETLVFTLGLALGLAGFLVGVTLIITGTCLSSTPRV*