Part of scaffold_908 (Scaffold)

For more information consult the page for scaffold_908 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PDZK1 ENSTTRG00000009223 (Bottlenosed dolphin)

Gene Details

PDZ domain containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008744, Bottlenosed dolphin)

Protein Percentage 97.76%
cDNA percentage 98.03%
Ka/Ks Ratio 0.33488 (Ka = 0.0123, Ks = 0.0369)

PDZK1 ENSBTAG00000005810 (Cow)

Gene Details

Na(+)/H(+) exchange regulatory cofactor NHE-RF3

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000007638, Cow)

Protein Percentage 89.39%
cDNA percentage 92.04%
Ka/Ks Ratio 0.379 (Ka = 0.0595, Ks = 0.1571)

PDZK1  (Minke Whale)

Gene Details

PDZ domain containing 1

External Links

Gene match (Identifier: BACU019552, Minke Whale)

Protein Percentage 97.35%
cDNA percentage 98.71%
Ka/Ks Ratio 0.96311 (Ka = 0.013, Ks = 0.0135)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1473 bp    Location:473589..459378   Strand:-
>bmy_13817
ATGGCCTCCACCTTCAACCCCCGAGAATGCAAGCTGTCTAAACAGGAAGGGCAAAGCTATGGCTTCTCCCTGCGAATTGAGAAGGACACTGATGGCCACCTGGTCCGGGTGGTTGAGAAGGGTAGCCCAGCAGAGAAGGCAGGTCTCCAGGATGGAGACAGAGTTCTTAGGATCAATGGTGTCTTTGTGGACAAGAAAGAGCATACGCAGGTTGTGGATCTGGTCAGAAAAAGTGGGAATTCAGTGACTTTACTGGTCCTGGATGGGGATTCTTATGAGAAAGCTATGAAAAAACAGGTAGATTTGAAAGAGTTGGGTCAAAGTCAGGAGTCGAGTTTGAATGATAAGAAGCTGCCCTCTGTGATGAATGGAGGAGCACAGACTTGGACGCAGCCACGGCTCTGCTACCTGGTGAAGGAGGGGAGTAGCTATGGCTTCTCTCTGAAAACTGTCCAAGAAGTGAATGGAGAGAATGTAGAGGATGCCACCCATGAGGAGGTGGTTGAAAAGGTGAAGAAGTCCGGAAGCCGCATCATGTTCCTGCTGGTGGACAAGGAAACTGACAAGCACCACAGTGAGCAGAAGATAAAATTCAAGAGAGAAACAGCCAGTTTGAAACTGCTACCCCACCATCCCCGGGTTGTGGAGATGAAGAAGGGAAGCAATGGCTATGGTTTCTATCTGAGGGCAGGCCCAGAACAGAAAGGTCAAATCGTTAAGGACATAGATTCTGGAAGTCCAGCAGAGAAGGCTGGCTTGAAGAACGATGACCTGGTGGTTGCTGTCAACGGCAAGTCTGTGGAGTCCCTCGATCATGACAGTGTGGTGGAAATGATTAAAAAGGGTGGAGACCAGACTTCACTGTTGGTGGTAGACAAAGAGACGGAAAACATATATAAACTGGCTGGCTTTTCTCCATTACTCTACTATCAAAATCAAGAACTGCCTAATGGGTCTGTCAAGGAGGCTCCAGTTCCTACTCCTGCTCCTCTGGAGGTCTCAAGCCCAGATACTACCGAGGAAGTAGCAGATCATAAGCCTAAACTCTGCAGGCTGGTCAAAGGTGAAGATGGCTATGGCTTTCACTTAAATGCGATTCAGGGTCAGCCAGGCTCATTCGTCAAAGAGGTACAGAAGGGTGGCCCTGCTGACCTGGCTGGGCTAGAGGATGAGGATGTCATCATTGAAGTGAATGGAGTGAACGTACTGGATGAGCCCTATGAGAAGGTGGTGGACAGAATCCAGAGCAGTGGCAAGAATGTCATACTCTTAGTCTGTGGAAAGAAGGCCTATGATTATTTCCAGGCTAAGAAAATCCCTATCGTTTCCTCCATGGCTAATCCACTGGATGACGCCCCTGATCCCGAAGAAGGAACGCCGGAGGAATCAGAGCAAGACGCGCACACAGCAAAAGAACGAGCCCACAGTACAGCCTCTCATTCTTCTTCCAGTTCTGAAGATACAGAGATGTGA

Related Sequences

bmy_13817T0 Protein

Length: 491 aa      View alignments
>bmy_13817T0
MASTFNPRECKLSKQEGQSYGFSLRIEKDTDGHLVRVVEKGSPAEKAGLQDGDRVLRINGVFVDKKEHTQVVDLVRKSGNSVTLLVLDGDSYEKAMKKQVDLKELGQSQESSLNDKKLPSVMNGGAQTWTQPRLCYLVKEGSSYGFSLKTVQEVNGENVEDATHEEVVEKVKKSGSRIMFLLVDKETDKHHSEQKIKFKRETASLKLLPHHPRVVEMKKGSNGYGFYLRAGPEQKGQIVKDIDSGSPAEKAGLKNDDLVVAVNGKSVESLDHDSVVEMIKKGGDQTSLLVVDKETENIYKLAGFSPLLYYQNQELPNGSVKEAPVPTPAPLEVSSPDTTEEVADHKPKLCRLVKGEDGYGFHLNAIQGQPGSFVKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVILLVCGKKAYDYFQAKKIPIVSSMANPLDDAPDPEEGTPEESEQDAHTAKERAHSTASHSSSSSEDTEM*