Part of scaffold_891 (Scaffold)

For more information consult the page for scaffold_891 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CCDC42B ENSTTRG00000016684 (Bottlenosed dolphin)

Gene Details

coiled-coil domain containing 42B

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015819, Bottlenosed dolphin)

Protein Percentage 88.81%
cDNA percentage 90.56%
Ka/Ks Ratio 0.56223 (Ka = 0.033, Ks = 0.0587)

BT.62206 ENSBTAG00000011924 (Cow)

Gene Details

coiled-coil domain-containing protein 42B

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000029528, Cow)

Protein Percentage 82.0%
cDNA percentage 85.0%
Ka/Ks Ratio 0.17776 (Ka = 0.1052, Ks = 0.5917)

CCDC42B  (Minke Whale)

Gene Details

coiled-coil domain containing 42B

External Links

Gene match (Identifier: BACU020472, Minke Whale)

Protein Percentage 97.49%
cDNA percentage 98.81%
Ka/Ks Ratio 0.62398 (Ka = 0.0108, Ks = 0.0173)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 912 bp    Location:413189..408645   Strand:-
>bmy_13622
ATGGCTGTGCCCTGGGAGAAATATTTCCGACTGGCCTTGCAAGAGAAACTGTCTACGAAGATCCAGGGGCAGAATGTGGACCACGTCCCACCGCCACTGCTGCGTCTCTTGGAGAAGAGGCAGGAACTAGTGGATGCGGACCAGGGCCTTCAGGCTCAGAAGGAGGTGTTCCAGACTATGAAGGCATCCCTGAAACAGCGGTGGGAACAATTGGAACAGAAAGAGCAGGAGTTAAAGGGGTCCTTTGATGCCGAGGCCCGGCGCAGCCGCGCACTGCGGAGGGCGGCGGAGGAGCGGCAACTGGCGGGCCGCCGGGAGGCGGAGGCGCTGCAGCTTCGGGCTCAGCTGGAGGAGCTGCAGCGGGAGCGCGCGCGGCTTCAGCGCCGGCTTTGGCGCCTCGAGCCCTGCGCGCGCCTGCTGGGGCAAGTACTGGAGCAGCTGCCCGAGTTCCAAGAGGTCCCCGAGCTGGTGGCGCGCTTCGACAGCCTGGCCGACACGCAGGCGGCGCTGAGGCTCACGGAGCGCCAGCGGCTCGCGGAGCTGGAGGAGGCGCGCGCGCGGCTGCAGCGGCTGCGGGACGCCTGGCAGGACGAGCTGCTGAGGCAGGGCCAGCGGCGAGCGCAACTGCTGGAGCAACTGGAGGCGGCGCGGGAGCGCACGCTGCACTGGGAATCCAAGTGTATTCAGATCCAGAACACCGCGGCTGAGAAGACCCTGCTCCTGGGACGCACCAGGATGGCAGCACTCAACCTGTTCCAGCTAGTGTGCCAGCACCAGAGGCGGCCACCTGCCCTGGACATCGAGGACACCGAGGGGCATCTGGAGCAGGTGAGGATCCCTCTTTATGTCACCTCCAGCCCCCTAACCGTTGGGAACATCATGGTGCCTGAAATCCCGCCTTCTCTGGGTTAA

Related Sequences

bmy_13622T0 Protein

Length: 304 aa      View alignments
>bmy_13622T0
MAVPWEKYFRLALQEKLSTKIQGQNVDHVPPPLLRLLEKRQELVDADQGLQAQKEVFQTMKASLKQRWEQLEQKEQELKGSFDAEARRSRALRRAAEERQLAGRREAEALQLRAQLEELQRERARLQRRLWRLEPCARLLGQVLEQLPEFQEVPELVARFDSLADTQAALRLTERQRLAELEEARARLQRLRDAWQDELLRQGQRRAQLLEQLEAARERTLHWESKCIQIQNTAAEKTLLLGRTRMAALNLFQLVCQHQRRPPALDIEDTEGHLEQVRIPLYVTSSPLTVGNIMVPEIPPSLG*