Part of scaffold_888 (Scaffold)

For more information consult the page for scaffold_888 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CASC3 ENSTTRG00000016896 (Bottlenosed dolphin)

Gene Details

cancer susceptibility candidate 3

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000016019, Bottlenosed dolphin)

Protein Percentage 88.91%
cDNA percentage 88.96%
Ka/Ks Ratio 0.17585 (Ka = 0.0055, Ks = 0.0315)

CASC3 ENSBTAG00000006250 (Cow)

Gene Details

Protein CASC3

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000008203, Cow)

Protein Percentage 96.86%
cDNA percentage 95.81%
Ka/Ks Ratio 0.13939 (Ka = 0.0151, Ks = 0.1082)

CASC3  (Minke Whale)

Gene Details

cancer susceptibility candidate 3

External Links

Gene match (Identifier: BACU007030, Minke Whale)

Protein Percentage 96.85%
cDNA percentage 97.59%
Ka/Ks Ratio 1.01607 (Ka = 0.025, Ks = 0.0246)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1818 bp    Location:143210..150997   Strand:+
>bmy_13556
CAGGGTGATGAAGGGGAGTACAGTGAAGAGGAAAACTCCAAAGTGGAGCTGAAATCAGAAGCCAATGATGCTGCTAATTCTTCAGCAAAAGACGAGAAGGGAGAAGAAAAGCCTGACACCAAAGGCACTGTGACTGGAGAGAGGCAAAGTGGGGATGGACAGGAGAGCACAGAGCCTGTGGAGAACAAAGTTGGTAAAAAAGGCCCTAAGSATTTGGATGATGATGAAGATCGGAAGAACCCAGCATACATACCCCGGAAAGGGCTCTTTTTTGAGCATGATCTTCGAGGGCAGACTCAGGAGGAGGAAGTCAGACCCAAGGGACGTCAGCGAAAGCTGTGGAAGGATGAGGGTCGCTGGGAGCATGACAGGTTTCGGGAAGATGAACAGGCTCCAAAGTCCCGACAGGAGCTCATTGCTCTTTATGGCTATGACATCCGCTCAGCTCACAATCCTGATGACATCAAACCCCGAAGAATCCGGAAACCCAGGTTTGGGAGTCCTCCACAAAGAGATCCGAACTGGATTGGTGAGCGGCCAAATAAGTCCCATCGCCACCAGGGTCCTGGGGGCACCTTACCACCAAGGACATTTATCAACAGGAATGCTGCAGGTACTGGCCGCATGTCTGCTGCCAGGAATTACTCTCGATCTGGAGGCTTCAAGGAAGGTTGTGCTGGTTTTAGGCCTGTGGAAGCTGGTGGGCAGCATGCTGGCCGGTCTGGTGAGACTGTTAAACATGAGACTAGTTACCGGTCACGGCGCCTGGAGCAGACTCCAGTAAGGGATCCATCTCCAGAAGCAGATGCTCAAGTGCTTGGCAGTCCTGAGAAGGAGGAGGCGGCCTCAGAGATACCAAATCCTGCTCCTGACACTGCACCACCAGCTCCTGACAGGCCTATTGAGAAGAAATCCTATTCCCGGGCAAGAAGAACCAGGGTCAAAGCTGGAGATGCAGTCAAGGTTGCAGAGGAGGTGCCCCCTCCACCTGAAGGGCTGACCCCAGCACCTCCAGTCCCAGAAACTACGCCTCCTCCGCCTGCTAAGACTGGGAACTGGGAGGCTCCAGTGGATTCTACTACAGGTGGACTTGAACAAGATGTGGCACAACTAAATATAACAGAACAGAATTGGAGCCCAGGGCAGCCTTCATTCCTGCAATCACGTGAGCTTCGGGGTATGCCCAACCACATACACATGGGAGCAGGACCTCCACCTCAGTTTAACCGGATGGAAGAAATGGGTGTCCAGGGTGGGCGAGCCAAACGCTATTCATCTCAACGGCAAAGACCTGTGCCGGAGCCCCCTGCCCCTCCTGTGCACATCAGTATCATGGAGGGACATTACTATGATCCATTGCAGTTCCAGGGACCAATCTATACCCATGGTGACAGCCCTGCCCCACTGCCTCCTCAGGGCATGATTGTGCAGCCAGAAATGCACCTTCCCCACCCAGGTTTACATCCCCACCAGACACCGGCGCCTCTGCCCAATCCAGGCCTCTATCCCCCACCAGTGTCCATGTCTCCAGGACAGCCACCACCTCAGCAGTTGCTTGCTCCTACCTACTTTTCTGCTCCAGGCGTCATGAACTTTGGTAATCCCAGTTACCCTTATGCGCCAGGGGCACTGCCTCCCCCACCACCGCCTCATCTATATCCTAACACGCAGGCCCCATCGCAGGTATATGGAGGAGTGACCTACTATAACCCCGCCCAGCAGCAGGTGCAGCCAAAGCCCTCCCCACCCCGGAGGACTCCCCAGCCAGTCACCATCAAGCCCCCACCACCTGAGGTTGTAAGCAGGGGTTCCAGTTAA

Related Sequences

bmy_13556T0 Protein

Length: 606 aa      View alignments
>bmy_13556T0
QGDEGEYSEEENSKVELKSEANDAANSSAKDEKGEEKPDTKGTVTGERQSGDGQESTEPVENKVGKKGPKXLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDRFREDEQAPKSRQELIALYGYDIRSAHNPDDIKPRRIRKPRFGSPPQRDPNWIGERPNKSHRHQGPGGTLPPRTFINRNAAGTGRMSAARNYSRSGGFKEGCAGFRPVEAGGQHAGRSGETVKHETSYRSRRLEQTPVRDPSPEADAQVLGSPEKEEAASEIPNPAPDTAPPAPDRPIEKKSYSRARRTRVKAGDAVKVAEEVPPPPEGLTPAPPVPETTPPPPAKTGNWEAPVDSTTGGLEQDVAQLNITEQNWSPGQPSFLQSRELRGMPNHIHMGAGPPPQFNRMEEMGVQGGRAKRYSSQRQRPVPEPPAPPVHISIMEGHYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEMHLPHPGLHPHQTPAPLPNPGLYPPPVSMSPGQPPPQQLLAPTYFSAPGVMNFGNPSYPYAPGALPPPPPPHLYPNTQAPSQVYGGVTYYNPAQQQVQPKPSPPRRTPQPVTIKPPPPEVVSRGSS*