Part of scaffold_869 (Scaffold)

For more information consult the page for scaffold_869 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

BDNF ENSTTRG00000000550 (Bottlenosed dolphin)

Gene Details

Brain-derived neurotrophic factor

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000515, Bottlenosed dolphin)

Protein Percentage 99.22%
cDNA percentage 98.95%
Ka/Ks Ratio 0.10781 (Ka = 0.0035, Ks = 0.0328)

BDNF ENSBTAG00000008134 (Cow)

Gene Details

Brain-derived neurotrophic factor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000010694, Cow)

Protein Percentage 96.77%
cDNA percentage 95.7%
Ka/Ks Ratio 0.09004 (Ka = 0.0143, Ks = 0.1587)

BDNF  (Minke Whale)

Gene Details

brain-derived neurotrophic factor

External Links

Gene match (Identifier: BACU008859, Minke Whale)

Protein Percentage 98.06%
cDNA percentage 98.06%
Ka/Ks Ratio 0.139 (Ka = 0.0086, Ks = 0.0618)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 777 bp    Location:712835..715105   Strand:+
>bmy_13432
ATGCCTCAGTTCCACCAGGTGAGAAGAGTGATGACCATCCTTTTCCTTACTATGGTTATTTCATACTTCAGTTGCATGAAGGCTGCCCCCATGAAAGAAGCCAACATCCGAGGACAAGGCAGCTTGGCCTACCCAGGTATGCGGACCCATGGGACTCTGGAGAGCGTGAATGGGCCCAAGGCGGGTTCAAGAGGCCTGACGTCGTCGTTGGCTGACACTGTTGAACACGTGATCGAAGAGCTTTTGGACGAGGACCAGAAAGTTCGACCCAGTGAGGAAAACAATAAGGACGCGGACGTGTACACGTCCCGGGTGATGCTCAGCAGTCAAGTGCCTTTGGAGCCTCCTCTCCTCTTCCTGCTCGAGGAATACAAAAATTACCTGGATGCTGCGAACATGTCCATGAGGGTCCGGCGCCACTCGGACCCTGCCCGCCGCGGGGAGCTGAGCGTGTGCGACAGCATCAGCGAGTGGGTGACGGCGGCGGATAAAAAGACTGCCGTGGACATGTCAGGCGGGACAGTCACGGTCCTCGAAAAAGTCCCCGTCTCGAAAGGCCAACTGAAGCAGTACTTCTACGAGACCAAGTGCAATCCCATGGGTTACACAAAGGAGGGCTGCAGGGGCATAGACAAGAGGCATTGGAACTCCCAGTGCCGAACTACCCAGTCGTACGTTCGGGCCCTCACCATGGATAGCAAAAAGCGCATTGGCTGGCGGTTCATACGGATAGACACTTCCTGTGTATGTACATTGACCATTAAGAGGGGAAGATAG

Related Sequences

bmy_13432T0 Protein

Length: 259 aa      View alignments
>bmy_13432T0
MPQFHQVRRVMTILFLTMVISYFSCMKAAPMKEANIRGQGSLAYPGMRTHGTLESVNGPKAGSRGLTSSLADTVEHVIEELLDEDQKVRPSEENNKDADVYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR*