Part of scaffold_827 (Scaffold)

For more information consult the page for scaffold_827 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LDLRAD1 ENSTTRG00000003196 (Bottlenosed dolphin)

Gene Details

low density lipoprotein receptor class A domain containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002996, Bottlenosed dolphin)

Protein Percentage 35.37%
cDNA percentage 44.72%
Ka/Ks Ratio 0.08635 (Ka = 0.7563, Ks = 8.7588)

LDLRAD1 ENSBTAG00000024195 (Cow)

Gene Details

low-density lipoprotein receptor class A domain-containing protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000040841, Cow)

Protein Percentage 37.8%
cDNA percentage 45.12%
Ka/Ks Ratio 0.07939 (Ka = 0.7895, Ks = 9.9448)

LDLRAD1  (Minke Whale)

Gene Details

low density lipoprotein receptor class A domain containing 1

External Links

Gene match (Identifier: BACU000246, Minke Whale)

Protein Percentage 39.02%
cDNA percentage 45.53%
Ka/Ks Ratio 0.05199 (Ka = 0.6996, Ks = 13.4554)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 492 bp    Location:664096..652298   Strand:-
>bmy_13289
ATGAGGGGGTTTGACTGCAGACTCAGGCCCCAGAAGAAGGTTCAGAGATATCAGGAACTCTGGCCAATGGGTCACCGCAGAAATATCAAGGATTTGTCGTATCGACCATGTAAAACAGCTTCACAGCTACTGGGCTTCTTGTGTGAGGACCTCTCTACTTGCTTGCCACCCTCCCTGCTCTGTAACGGCAGGCTGGACTGCAGTCACGGTGAAGATAAGTCTGCCACATATTGTGGCCAAATGCCCAGCAGTCTCTCACAAAACTTGATATTCAAGTGTCCCAACCAGAAGACTTGGACATACGTGGACAAGGTGTGTGACACAAGAAAYGACTGTGGGGATTGTTCAGATGACTCAGTTTCACAGTGCCCAAAGTGTTCAGGCTACAGATGTGATACTGTTTTCTTTGCCGACTGTGCCTGCATTCCCAGAACTCGCTGCAAAGATGGCAGTCAAGACTGTGCTGATTGGAGTCGTGAAAATTTATGTGAA

Related Sequences

bmy_13289T0 Protein

Length: 164 aa      View alignments
>bmy_13289T0
MRGFDCRLRPQKKVQRYQELWPMGHRRNIKDLSYRPCKTASQLLGFLCEDLSTCLPPSLLCNGRLDCSHGEDKSATYCGQMPSSLSQNLIFKCPNQKTWTYVDKVCDTRNDCGDCSDDSVSQCPKCSGYRCDTVFFADCACIPRTRCKDGSQDCADWSRENLCE