Part of scaffold_663 (Scaffold)

For more information consult the page for scaffold_663 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CSF1 ENSTTRG00000016044 (Bottlenosed dolphin)

Gene Details

colony stimulating factor 1 (macrophage)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015206, Bottlenosed dolphin)

Protein Percentage 48.38%
cDNA percentage 49.28%
Ka/Ks Ratio 0.46748 (Ka = 0.0267, Ks = 0.0571)

CSF1 ENSBTAG00000000283 (Cow)

Gene Details

macrophage colony-stimulating factor 1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000000353, Cow)

Protein Percentage 85.74%
cDNA percentage 90.85%
Ka/Ks Ratio 0.4791 (Ka = 0.0789, Ks = 0.1648)

CSF1  (Minke Whale)

Gene Details

colony stimulating factor 1 (macrophage)

External Links

Gene match (Identifier: BACU002732, Minke Whale)

Protein Percentage 98.64%
cDNA percentage 99.09%
Ka/Ks Ratio 0.42608 (Ka = 0.0064, Ks = 0.0149)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1665 bp    Location:435518..455514   Strand:+
>bmy_11919
ATGACCGCGCGGGGCGCCGCCGGGCGCTGCCCTCCCACGACATGGCTGGGCCCCCTGCTGCTGCTGGCCTGTCTCCTCGTGAGCAGGAGTACTACCGAGGAGGTGTCGGAGAACTGTAGCCACATGATTGGGAACGGACACCTGCAGTTCCTGCAGCAGCTGATTGACAGTCAGATGGAGACCTCGTGCCAAATTGCCTTCGAGTTTGTAGACCAGGAGCAGTTGAACGACCCCGTGTGCTACCTTAAGAAGGCATTTCTCCTGGTGCAAGACATAATGGAGGACACCATGCGCTTCAAAGACAACACCCCCAATGCCAATGTCATTGTCCAGCTCCAGGAACTCTCTCTGAGGCTGAGGAGCTGCTTCACCAGGGACTATGAAGAACAGGACAAGGCCTGTGTCCGAACTTTCTATGAGACGCCTCTCCAGTTGCTGGAGAAGATCAAGAATGTCTTTAATGAAACAAAGAATCTCCTTAAAAAGGACTGGAACATTTTCAGCAAGAACTGCAACAATAGCTTTGCYAAATGCTCCAGCCAAGATGTGGTGACCAAGCCTGATTGCAACTGCCTGTACCCCAAAGCCACCCCTAGCAGTGACCTGGCCTCTGTCTCCCCTCAGCAGCCCCTCGCCCCCTCCATGGCCCCTATGGCTGGCTTGACCTGGGCTGACTCTGAGGGGACAGAGGGCAGCTCCCTCTTGCCCAGAGAGCAGGCCCTTCGCACGGTGGACCCGGGCAGTGCCAAGCAGCGACCACCCAGGAGCACCTGCCAGAGCTTTGAGTCACCAGAGACCCTGGGCGTCGAGGGCCGCCCCACTGGAGGTTCACCTCAGCCCCAGCACTCTGTCGGAGCTCCTGTCACTGGGATGGAGGACATTCTTGACTCTGTGCTGGGCACTAACTTGGCCCTGGAAGAGGCCTCCGGAGAGGCTAGTGAGGGTCTTATACCCCAAGGGGCAGAGCTTGCCTCCCGCACGTTGCGGGGAGGCAGCGTCCAGGCAGAGACTGCCTGGCCCAGCCGTCTCCTCTCAACATCTTCACCACTCTCTGCGTCCGGAAAGGGCTGGCAGCCTGCGGATGTAACTAGCACACCACTGCCCATGGTGGGCCCCGTGAGACCCACCGAGGCCTGGAGTCACACACCTGAGAATGCAGACCATTCATCTGCCTCGCCCAGAGACCACCAGGAGCCAGGCTCTGCCGGGGCCCCAGCACTGCGCCCGCACGGCCTCAGCAGTCCCTCTGCCCCCTCTTCTCAGCCAAGGCTTCCCAGAAGCCATTCCTGGGGCAACGTGCTGCCCCTTGGGGAGCTGGAAGGCAAGAGGAGCACCAGGGACCGGAGGAGCACCGCAGAGCTGGAAGGAGGACAAGCAAGTGAGGGGGTGGCCAGGCCCCCAGCCCGTTTTAACTCCGTTCCTTTGACTGACGCAGGCCATGAGAGGCAACACAAGGAGCCCTCTGACCCCCAGCTCCCCGGCTTTGTCTTCCGCCTGCTGGTGCCCAGCATCATCCTGGTCCTGCTGGCTGTCGGCGGCCTCCTGTTCTACAGGCGGAGGCGGCGGAGCCATCGAGAGCCTCAGACAGTGGATTCTCCCATGGAGCAACCAGAGGGCAGCCCCCTGACCCAGGATGAGGACAGACAGGTGGAACTGCCAGTGTAG

Related Sequences

bmy_11919T0 Protein

Length: 555 aa      View alignments
>bmy_11919T0
MTARGAAGRCPPTTWLGPLLLLACLLVSRSTTEEVSENCSHMIGNGHLQFLQQLIDSQMETSCQIAFEFVDQEQLNDPVCYLKKAFLLVQDIMEDTMRFKDNTPNANVIVQLQELSLRLRSCFTRDYEEQDKACVRTFYETPLQLLEKIKNVFNETKNLLKKDWNIFSKNCNNSFAKCSSQDVVTKPDCNCLYPKATPSSDLASVSPQQPLAPSMAPMAGLTWADSEGTEGSSLLPREQALRTVDPGSAKQRPPRSTCQSFESPETLGVEGRPTGGSPQPQHSVGAPVTGMEDILDSVLGTNLALEEASGEASEGLIPQGAELASRTLRGGSVQAETAWPSRLLSTSSPLSASGKGWQPADVTSTPLPMVGPVRPTEAWSHTPENADHSSASPRDHQEPGSAGAPALRPHGLSSPSAPSSQPRLPRSHSWGNVLPLGELEGKRSTRDRRSTAELEGGQASEGVARPPARFNSVPLTDAGHERQHKEPSDPQLPGFVFRLLVPSIILVLLAVGGLLFYRRRRRSHREPQTVDSPMEQPEGSPLTQDEDRQVELPV*