Sequence details bmy_07563 (Coding sequence)

Part of scaffold_314 (Scaffold)

For more information consult the page for scaffold_314 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CPSF1 ENSTTRG00000001937 (Bottlenosed dolphin)

Gene Details

cleavage and polyadenylation specific factor 1, 160kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001821, Bottlenosed dolphin)

Protein Percentage 83.75%
cDNA percentage 82.8%
Ka/Ks Ratio 0.02918 (Ka = 0.0045, Ks = 0.1553)

CPSF1 ENSBTAG00000008355 (Cow)

Gene Details

Cleavage and polyadenylation specificity factor subunit 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000011004, Cow)

Protein Percentage 97.71%
cDNA percentage 93.6%
Ka/Ks Ratio 0.01456 (Ka = 0.0091, Ks = 0.6261)

CPSF1  (Minke Whale)

Gene Details

cleavage and polyadenylation specific factor 1, 160kDa

External Links

Gene match (Identifier: BACU001454, Minke Whale)

Protein Percentage 99.65%
cDNA percentage 99.02%
Ka/Ks Ratio 0.0271 (Ka = 0.0017, Ks = 0.063)

Additional orthologs identified in other species via the OPTIC pipeline.

CPSF1 (Human)   Cpsf1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3477 bp    Location:383561..398016   Strand:+
Raw sequence 
>bmy_07563
ATGTACGCCGTATACAAACAGGCGCATCCGCCCACCGGCCTCGAGTTCTCGATGTATTGCAACTTTTTTAACAACAGCGAGCGCAACCTCGTGGTGGCCGGGACCTCGCAGCTCTACGTGTACCGCCTCAACCGCGACGCCGAGGTGCCGACCAAGAATGACAGGAGCGCAGAGGGGAAGGCGCACCGGGAGCACCGGGAAAAGCTGGAGCTGGTGGCTTCCTTCTCTTTCTTCGGCAACGTCATGTCCATGGCCAGCGTGCAGCTGGCGGGCGCCAAGAGGGATGCCCTGCTCCTGAGCTTCAAGGATGCCAAGCTGTCGGTGGTGGAATACGACCCGGGCACCCACGACCTCAAGACCCTGTCTCTGCACTACTTTGAGGAGCCTGAGCTGCGGGACGGCTTCGTGCAGAACGTGCACACGCCGCGGGTGCGTGTGGACCCCGACGGGCGCTGCGCGGCCATGCTCATCTACGGCACGCGGCTGGTGGTCCTGCCCTTCCGCAGGGAGAGCCTGGCCGAGGAGCACGAGGGGCTCGTGGGTGAGGGGCAGAGGTCCAGCTTCCTGCCCAGCTACATCATTGACGTGAGGGCCCTGGACGAGAAGCTTCTCAACATTGTCGACCTGCAGTTCCTGCACGGCTACTACGAGCCCACCCTGCTCATCCTGTTTGAGCCCAACCAGACCTGGCCTGGGCGGGTGGCTGTGCGGCAGGACACGTGCTCCATCGTGGCCATTTCGCTGAACATCACGCAGAAGGTCCACCCCGTCATCTGGTCCCTCACCAGCCTGCCTTTTGACTGCACCCAGGCCCTTGCCGTGCCCAAGCCCATAGGTGAGTTTCAGAACAGTCCCGAGCCAGACCTGGAGATCGTGGTGTGCTCCGGCTACGGGAAGAACGGGGCCCTGTCGGTGCTGCAGAAGAGCATCCGGCCCCAGGTGGTGACCACCTTTGAGCTTCCTGGCTGCTATGACATGTGGACAGTCATCGCCCCTGTGCGTAAGGAGCAGATCCTACAGACGGGGCAGGAGATCATGGAGCTGGACACCAGCGGCTTCGCCACGCAGGGCCCCACAGTCTTTGCTGGCAACATCGGGGACAATCGCTACATCGTGCAAGTGTCGCCACTCGGCATCCGCCTGTTGGAAGGAGTGAACCAGCTGCACTTCATCCCCGTGGACCTGGGCTCCCCCATCGTGCAGTGCGCCGTGGCCGACCCCTACGTGGTCATCATGAGTGCTGAGGGCCACATCACCATGTTCCTGCTCAAGAGTGACTCGTATGGGGGCCGCCACCACCGCCTGGCGCTGCACAAGCCCCCGCTGCACCACCAGTCCAAGGTGATTACGCTCTGCGTGTACCGGGACGTCAGCGGCATGTTCACCACCGAGAGCCGCCTGGGCGGGGCCCGCGACGAGGTGGGCGGCCGCAGCGGCTCAGAGGCCGAGTGCCAGGGCTCAGAGACCAGCCCCACGGTGGATGACGAGGAGGAGATGCTTTACGGGGACTCGGGCTCCCTCTTCAGCCCCAGCAAGGAGGAGGCCCGCAGGAGCAGCCAGCCCCCCGCCGACCGGGACCCCACCCCCTTCCGGGCTGAGCCCACCCACTGGTGCCTGCTGGTGCGGGAGAACGGAACCATGGAGATCTACCAGCTCCCCGACTGGCGGCTGGTGTTCCTGGTGAAGAACTTCCCTGTGGGGCAGCGGGTCCTGGTGGACAGCTCCTTTGGTCAGCCCACCACCCAGGGCGAGGCCCGGAAGGAGGAGGCCACGCGCCAGGGCGAGCTGCCCCTCGTCAAGGAGGTGCTGCTGGTGGCGCTGGGGAGCCGCCAGCGCAGGCCCTACTTGCTGGTGCACGTGGACCAGGAGCTGCTCGTTTATGAGGCCTTCCCCCACGACTCACAGCTCGGCCAGGGGAACCTCAAAGTTCGCTTCAAGAAGGTCCCGCACAGCATCAACTTCCGAGAGAAGAAGCCAAAGCCGTCCAAGAAGAAGGCAGAAGGTGGCAGCGCTGAGGAGGGCGCTGGGGCCCGAGGCCGTGTGGCGCGGTTCCGCTACTTTGAGGACATTTATGGCTACTCTGGGGTGTTCATCTGCGGCCCCTCGCCCCACTGGCTCCTGGTGACTGGCCGGGGGGCCCTGCGGCTGCACCCCATGGGCATCGATGGCCCCATCGACTCCTTTGCCCCATTCCACAACGTCAACTGCCCCCGCGGCTTCCTGTACTTCAACAGACAGGGCGAGCTGAGGATCAGTGTCTTGCCTGCCTACTTGTCCTACGATGCCCCGTGGCCTGTCAGGAAGATCCCGCTGCGCTGCACGGCCCACTATGTGGCTTACCATGTGGAGTCCAAGGTGTATGCTGTTGCCACCAGCACCAACACGCCGTGTACCCGCATCCCGCGCATGACGGGCGAGGAGAAGGAGTTTGAGACCATTGAGAGAGATGACCGTTACATCCACCCTCAGCAGGAGGCCTTCTCCATCCAGCTCATCTCCCCAGTCAGCTGGGAGGCCATCCCCAATGCCAGGATCGAGCTGGAGGAGTGGGAGCATGTGACCTGCATGAAGACGGTGTCCCTGCGCAGTGAGGAAACCGTGTCGGGCCTCAAGGGCTACGTAGCTGCCGGGACCTGCCTCATGCAAGGGGAGGAGGTCACGTGCCGAGGGCGGATCCTGATCATGGACGTGATCGAGGTGGTGCCCGAGCCCGGCCAGCCCCTGACCAAGAACAAGTTCAAGGTCTTGTACGAGAAGGAGCAGAAGGGGCCCGTGACCGCCCTGTGCCACTGCAATGGCCACCTGGTGTCAGCCATCGGCCAGAAGATCTTCCTGTGGAGCCTGCGGGCCAGCGAGCTGACAGGCATGGCCTTCATCGACACACAGCTCTACATCCACCAGATGATCAGCGTCAAGAACTTCATCCTGGCCGCGGACGTCATGAAGAGCATCTCGCTGCTACGCTACCAGGAGGAGAGCAAGACGCTGAGCCTTGTGTCCCGGGACGCCAAGCCCCTGGAAGTGTACAGCGTGGACTTCATGGTGGACAACGCCCAGCTGGGCTTCCTGGGTGAGCGCGGGGGCTGGGGTCCCCGGGACCTCGCTGGGGCTGGGGCTGACCGTGGGCTCTGTTCCCTAGTGTCCGACCGTGACCGCAACCTCATGGTCTACATGTACCTGCCAGAGGCCAAGGAGAGCTTCGGGGGCATGCGGCTGCTGCGCCGGGCGGACTTCCACGTGGGCGCCCACGTGAACACGTTCTGGAGGACCCCCTGCCGGGGGGCTGCCGAAGGGCCCAGCAAGAAGTCCGTTGTGTGGGAGAACAAGCACATCACGTGGTTTGCCACGCTGGACGGCGGCATCGGCCTCCTGCTGCCCATGCAGGAGAAGACCTACCGGCGGCTGCTGATGCTGCAGAACGCGCTGACCACCATGCTGCCCCACCACGCCGGCCTCAACCCGCGTGCCTTCCGGTGA

Related Sequences

bmy_07563T0 Protein

Length: 1159 aa      View alignments
>bmy_07563T0
MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEVPTKNDRSAEGKAHREHREKLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLVGEGQRSSFLPSYIIDVRALDEKLLNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIAPVRKEQILQTGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGSPIVQCAVADPYVVIMSAEGHITMFLLKSDSYGGRHHRLALHKPPLHHQSKVITLCVYRDVSGMFTTESRLGGARDEVGGRSGSEAECQGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPTPFRAEPTHWCLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEARKEEATRQGELPLVKEVLLVALGSRQRRPYLLVHVDQELLVYEAFPHDSQLGQGNLKVRFKKVPHSINFREKKPKPSKKKAEGGSAEEGAGARGRVARFRYFEDIYGYSGVFICGPSPHWLLVTGRGALRLHPMGIDGPIDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVESKVYAVATSTNTPCTRIPRMTGEEKEFETIERDDRYIHPQQEAFSIQLISPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLGERGGWGPRDLAGAGADRGLCSLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGAAEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFR*