Sequence details bmy_06495 (Coding sequence)

Part of scaffold_244 (Scaffold)

For more information consult the page for scaffold_244 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CIITA ENSTTRG00000004733 (Bottlenosed dolphin)

Gene Details

class II, major histocompatibility complex, transactivator

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004460, Bottlenosed dolphin)

Protein Percentage 96.72%
cDNA percentage 97.51%
Ka/Ks Ratio 0.27578 (Ka = 0.0156, Ks = 0.0565)

CIITA ENSBTAG00000020649 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027518, Cow)

Protein Percentage 87.52%
cDNA percentage 89.44%
Ka/Ks Ratio 0.20692 (Ka = 0.066, Ks = 0.3191)

Additional orthologs identified in other species via the OPTIC pipeline.

CIITA (Human)   Ciita (Mouse)  

Genome Location

Sequence Coding sequence

Length: 3438 bp    Location:359544..412283   Strand:+
Raw sequence 
>bmy_06495
ATGCTGCTCTCCAGCCATCGGCCGAGCCAAGTGCAGGTGCTTCTGGACAACCTGCTGGCAGAGGATCTTCTCTCCAGGGAGTACCACTACGCCCTGCTCCATGAGCCTGACGGTGAGGCTCTGGCCAGGAAGATCTCCTTGACCCTGATGGAGAAAGGAGACCCAGACCTGGCCCCCTTGGGGTGGATCTGGAGTGGGCTGCAGGCCCCGGCAGCCGAGAGGGACTCCGGCTACAAGGACCCTGGGGGCAGTGGACAGCACACAACCATGGAGTTGGGGCCTCTAGAGGGCGGGTACCTGGAGCTTCTCAACAGCAATGCTGACCCTTTGCAGCTCTACCATCTCTATGACCGGATGGACCTGGCTGGAGAAGAAGAGATAGAGCTCTGCTCAGAACCTGACACGGACACCATCAACTGCGAACAGTTCAGCAGGCTGTTGTGTGATATGGAAGGTGATGAAGAGACCAGGGAAGCTTATGCCAATATCGTCGAGCACATAGGACTGGAAGAAATGATCAGCGAGAGTGTGGAGGTGCTGGAGGAAGCAGGACAGAAAAGTCAGAAAAGACCCTTCCCAGAGGAGCTGCCTGTGGATCTGAAGCACAGGAAGCTAGCTGAGCCCCTAGCCATGCCCGTGGTGACTGGTGCTTTCCTGGTGGGGCTAGTGAGCGACTCTTCGGCTCAGCCCTGCCCGTCACCACCTGCTCTGTTCAACAAGGAGCCAGCATCCAGCCAGACCCGGCTGAAAGACACCGCGCCCCCTTCCAGTTCCTTGTTGAGCTGCCTGAGTCTCCCTGCTGCACCCATCCAGATCATCCCCACTCTCTCCACTCTGCCCCAGGGGCTCTGGCAAATCTCAGGGGCTGGGACAGGGGTCTCCAGTATACTCATCTACCAAGGTGAGGTGCTCCAGGCCAGCCAAACAMCCCCCTCCAGCAGCCCAGCTGTCTACAGCCTCCCGAAGTCCCCAGACCGGCCCGGCTCCACCAGCCCCTTTGCCCCATCGGCAGCTGACCTCCCCAGCATGCCTGAACCAGCCCTGACCTCCCGTGCAAACCTAACAGTGGATGAGATGTCCCCCACCCAATGCCCAGCAGCTCACAAGGCCTCCAGCAAGCTTCCCAAGTGGCCTGAGAGTGTGGAACAATTTTACTGCTCGCTACGGAACAAGTACCAGGCTAAGCCCGCAGGCCCGGAAGGCATCCTGGTGGAGGTGGACCTGGTGAGAGTAAGGCTGGAGAGGAGCGGCGGCAAAAGCCAGGACAGAGAGCTGACCACCCTGGACTGGGCAGAGCGGCAGCCGGCCCGAGGAGGTCTGGGCGAGGTGCTGCTGGCCTCTAGCAACCACCGGCGGCCACGTGAGACGCAGGTGATCGCCGTGCTGGGCAAAGCAGGACAGGGGAAGAGTCACTGGGTCCAGGCCGTGAGCTGGGCCTGGGCCTGCGGCCAGCTGCCACAGTACGACTTTATCTTCTGCATCCCCTGCCACTGTTTGGACCGTCCGGGGGACACCTACCGCCTGCAGGATCTGCTCTTCTCCCTGGGTTCACAGCCACTGTCAGGGGACGACGAGGTCTTCAGTTACATCTTGAGGAGGCCCGACCGCATTCTGCTCATCCTGGATGCCTTCGAGGAGCTCGAAGCCCAAGACGGCTTCCTGCACAGCGCGGGCGGACCCATGTCAGCAGAATTCCGCTCTCTCCGGGGGCTGCTGGCGAGCCTCTTCCAGCGCAAGCTGCTGCGCGGCTGCACCCTGCTGCTTACAGCCCGGCCCCGGGGCCGCCTGGCCCAGAGCCTGAGCAAGGCCGACGCTCTGTTCGAAGTGGCCGGCTTCTCCGCCCAGCAGGCCGAGACCTATGTGATGCGCTACTTTGAGTGTTCGGGGGCCACCGAGCACCAAAAGAGAGCCCTGGCGCTCCTCCAGTCCCAGCCATTTCTCCTGAGTCACAGCCATAGCCCCACTGTGTGCCGGGCCGTGTGCCAGCTCTCGGAGGCCCTCCTGGAGCTAGGTGATGAGGCCCAGCTGCCTTCCACACTCACGGGCCTCTATGTTGGCTTACTAGGCCCAGGAGCCCGTGACAGCCCCCCAGGGGCCCTGGTGGGACTGGCCAGGCTGGCCTGGGAGCTGGGCCGCGGTCACCAGAGCAGCCTGCGGGAGGGCCAGTTCCCATCGGCTGAGGTGAGGGCCTGGGCTGTGGCCCAAGGCTTGGTGCAGCCCACCCCGGGGGCCCCGGAGACCGAGCTGGCCTTCTCCAGCTTCCTCCTGCAATGCTTCCTGGGGGCCGTGTGGCTGGCTCTGAGCAGCGAAATCAAGGACAAGGAGCTGCCGCAGTATTTGGCACTGACCCCGAGGAAGAAGAGGCCCTATGACAACTGGCTGGAGGGCGTGCCGCGCTTTCTGGTCGGGCTGGTCTTCCAGCCTCGTGCCCGCTGCCTGGGAGCCCTGGCAGGGCTGGCGGCCTCCACCTCAGCAGACAGGAAGCAGAAGGTCCTCACCAGGTACCTGAAGCGGCTGCAGCCTGGGACGCTGAAGGCGGGGCGGCTGCTGGAGCTGCTGCACTGCGCCCACGAGGCGCTGGATGCTGGGCTTTGGCAGCATGTGCTGCAGGGGCTCCCGGCCCACCTCTCGTTCCTGGGCACCCGGCTCACGCCTCCCGACACCCACGTGCTGGGCAGCGCCTTGGAGGCAGCGGGCCGAGACTTCTCCCTGGACCTCCGCAGCACTGGCGTTGACCCCTCTGGACTGGGGAGCCTCGTGGGGCTCAGCTGTGTCACCCATTTCAGGGCTGCCTTGAGTGACACAGTGCAGCTGTGGGAGTCCCTACAGCAGCATGGGGAGGCCAAGCTACTCCGAGCAGTGAAGGAGAAGTTCACCATTGAGCCTTTCAAGGCTGAATCCATGAAGGATGTGGAAGACCTGGGCAACCTCGTGCAGATCCAGAGGACAAGAAGTTCCTCTGAAGACACGCCTGGGGAACTCCCTGCCATCCGAGACTTAATGAAGCTGGAGTTTGCGCTGGGCCCCATCTTGGGCCCTCAGGCTTTTCCCAAACTGGTGAAGATCCTTGAGGCCTTTTCTTCCCTTCAGCATCTGGACCTGGACTCGCTGAGCGAGAACAAGATCGGGGATGAGGGTGTCGCCCAGCTCTCGGCCACCTTCCCTCAGCTGAAGGCCCTGGAGACACTCAATTTGTCCCAGAACAACATCACTGACTTGGGTGCCTGCAAGCTGGCCGAGGCCCTGCCCTTGCTGGCTGCGTCCCTCCTCAGGCTGAGCTTGTACAATAACTGCATCTGCGACGTGGGAGCCGAGAGCCTGGCACACGTGCTTCCAGACATGGTGTCCCTCCGGGTGCTGGAGATGTGGACGCCCACCATCCCTTTTGGCGTCCAGGAACACCTGCAGCAGCTGGACTCAAGGATCATCCTGAGATGA

Related Sequences

bmy_06495T0 Protein

Length: 1146 aa      View alignments
>bmy_06495T0
MLLSSHRPSQVQVLLDNLLAEDLLSREYHYALLHEPDGEALARKISLTLMEKGDPDLAPLGWIWSGLQAPAAERDSGYKDPGGSGQHTTMELGPLEGGYLELLNSNADPLQLYHLYDRMDLAGEEEIELCSEPDTDTINCEQFSRLLCDMEGDEETREAYANIVEHIGLEEMISESVEVLEEAGQKSQKRPFPEELPVDLKHRKLAEPLAMPVVTGAFLVGLVSDSSAQPCPSPPALFNKEPASSQTRLKDTAPPSSSLLSCLSLPAAPIQIIPTLSTLPQGLWQISGAGTGVSSILIYQGEVLQASQTXPSSSPAVYSLPKSPDRPGSTSPFAPSAADLPSMPEPALTSRANLTVDEMSPTQCPAAHKASSKLPKWPESVEQFYCSLRNKYQAKPAGPEGILVEVDLVRVRLERSGGKSQDRELTTLDWAERQPARGGLGEVLLASSNHRRPRETQVIAVLGKAGQGKSHWVQAVSWAWACGQLPQYDFIFCIPCHCLDRPGDTYRLQDLLFSLGSQPLSGDDEVFSYILRRPDRILLILDAFEELEAQDGFLHSAGGPMSAEFRSLRGLLASLFQRKLLRGCTLLLTARPRGRLAQSLSKADALFEVAGFSAQQAETYVMRYFECSGATEHQKRALALLQSQPFLLSHSHSPTVCRAVCQLSEALLELGDEAQLPSTLTGLYVGLLGPGARDSPPGALVGLARLAWELGRGHQSSLREGQFPSAEVRAWAVAQGLVQPTPGAPETELAFSSFLLQCFLGAVWLALSSEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLVGLVFQPRARCLGALAGLAASTSADRKQKVLTRYLKRLQPGTLKAGRLLELLHCAHEALDAGLWQHVLQGLPAHLSFLGTRLTPPDTHVLGSALEAAGRDFSLDLRSTGVDPSGLGSLVGLSCVTHFRAALSDTVQLWESLQQHGEAKLLRAVKEKFTIEPFKAESMKDVEDLGNLVQIQRTRSSSEDTPGELPAIRDLMKLEFALGPILGPQAFPKLVKILEAFSSLQHLDLDSLSENKIGDEGVAQLSATFPQLKALETLNLSQNNITDLGACKLAEALPLLAASLLRLSLYNNCICDVGAESLAHVLPDMVSLRVLEMWTPTIPFGVQEHLQQLDSRIILR*