Sequence details bmy_06317 (Coding sequence)

Part of scaffold_237 (Scaffold)

For more information consult the page for scaffold_237 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NCSTN ENSTTRG00000001839 (Bottlenosed dolphin)

Gene Details

nicastrin

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001730, Bottlenosed dolphin)

Protein Percentage 88.29%
cDNA percentage 88.48%
Ka/Ks Ratio 0.24894 (Ka = 0.0092, Ks = 0.0369)

BT.48812 ENSBTAG00000004334 (Cow)

Gene Details

nicastrin precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000005677, Cow)

Protein Percentage 88.01%
cDNA percentage 88.58%
Ka/Ks Ratio 0.28046 (Ka = 0.0793, Ks = 0.2828)

Additional orthologs identified in other species via the OPTIC pipeline.

NCSTN (Human)   Ncstn (Mouse)  

Genome Location

Sequence Coding sequence

Length: 2130 bp    Location:658193..672985   Strand:+
Raw sequence 
>bmy_06317
ATGGCCACGGATGGGGGTGGCTGTGTGGCCGACCTGGGAAGTCGGAGTCTCCTTCGCCTTGTGTCTTTCTGCGTCCTACTGGCAGGTTTGTGTGAAGGAAACTCAGTGGAGAAGAAGATCTACATCCCCTTAAATAAAACAGCTCCCTGTGTCCGTCTGCTCAATGCTACTCATCAGATTGGCTGCCAGTCTTCCGTTAGTGGGGACACAGGGGTTATCCACGTAGTACAGAAGGAAGAAGACCTACAGTGGGTGTTGACCGATGGCCCTAACCCCCCTTATGTGGTTCTGCTGGAGGGCACGCTCTTTACCAGGAATCTGATGGAGAAGCTGAAGGGGAGAACCAGCCGAATTGCTGGTCTTGCAGTGTCTTTAGCCAAGCCCAGTCCTGCCTCAGGCTTCTCTCCTAGTGTGCAGTGTCCCAATGATGGGTTTGGTGTTTACTCCAACTCCTATGGGCCAGAGTTTGCTCACTGCAGAGAGATAGCATGGAACTCCCTGGGCGATGGCTTGGCTTATGAGGACTTCAGTTTCCCCATCTTCCTTCTTGAAGATGAAAATGAAACCAATGTCATTAAGCAGTGCTACCACGATCACAACCTGAGTCAGAACGGCTCAGCGCCGGCCTTCCCACTGTGCGCCATGCAGCTCTTTTCACACATGCACGCCGTCATCAGCACCGTCACCTGCATGCGACGCAGCTTCATCCAGAGCTCCTTCAGCATCAACCCAGAAATCGTCTGTGACCCCCTGTCCGACTACAACGTATGGAGCATGCTTAAGCCTGTAAATACCTCTGAGACGTTGGAGCCCGATGACAAGGTTGTGGTGGCTGCCACCCGGCTGGACAGTCGTTCCTTTTTCTGGAATGTGGCCCCAGGGGCTGAAAGTGCCGTTGCCTCCTTCGTCACTCAGCTGGCTGCAGCTGAAGCTCTGCAGAAGGCACCCGATGTGACCACCCTGCCCCGCAATGTCATGTTTGTCTTCTTCCAAGGGGAAACTTTTGACTACATTGGCAGCTCAAGAATGGTCTACGATATGGAGAATGGCAAGTTTCCTGTGCAGTTAGAGAACATTGACTCATTCGTGGAGCTGGGACAGGTGGCCTTAAGAAATTCACTAGAGCTTTGGATGCACACAGACCCCATGTCTCAGAAAAATGAAACTGTACAGAACCAGGTGGAGGAGCTCCTGACCACCCTGGAGAAGAGCGGTGCTGGCGTCCCTACTGTAGTCCTCAGGAGGCTGAGTCGGTCCCAGCCTCTCCCACCATCTTCTCTGCAGCGATTTCTTCGAGCTCGAAACATCTCTGGCGTTGTTCTTGCTGACCACTCTGCTGTCTTCCATAACCACTATTACCAGAGCATTTACGACACTGCTGAGAACATTAATGTGACCTACCCTGAAGGGCAGAGCCCTGAAGAGGACCTGAACTTTGTGACAGACGCTGCCAAGGCTCTGGCAGGTGTGGCCACGGTGCTGGGACGTGCACTGTACCAGCTCGCAGGAGGAACCAACTTCAGCCACACCATTCAGGCCGATCCCCAGACGGTTACCCGCCTGCTCTATGGGTTCCTGGTTAGAGCCAACAACTCGTGGTTCCAGTCTATCCTCAGGCCAGACCTAAGGTCCTACTTGGGTGACGGGCCTCTTCAGCATTACATCGCCGTCTCCAGCCCCACCAACACCACTTACGTTGTACAGTATGCCTTGGCAAATTTGACTGGCAAGGTGATCGACCTTACCCGAGAGCAGTGCCAGGATCCGAGTAAAGTCCCCACTGAAAACAAGGATCTGTACGAGTACACTTGGGTTCAGGGCCCTTTGAATTCCAACGAGACAGACCGGCTTCCCCGGTGTGTGCGTTCCACGGCACGACTCGCCAGGGCCTTGTCCCCTGCCTTTGAATTGAAGCAGTGGGGCTCTACTGAATACTCTACATGGACTGAGAGCCGCTGGAAAGACATCCGCGCCCGGATATTTCTGATAGCCAGCAAAGAGCTGGAGTTTATCACCCTGATGGTGGGCTTCGGCGTCCTCGTCTTCTCTCTTGTCGTCACCTACTGCATCAATGCCAAAGCCGATGTCCTTTTCATTGCTCCCCGGGAACCAGGATCTGTGTCTTACTGA

Related Sequences

bmy_06317T0 Protein

Length: 710 aa      View alignments
>bmy_06317T0
MATDGGGCVADLGSRSLLRLVSFCVLLAGLCEGNSVEKKIYIPLNKTAPCVRLLNATHQIGCQSSVSGDTGVIHVVQKEEDLQWVLTDGPNPPYVVLLEGTLFTRNLMEKLKGRTSRIAGLAVSLAKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIAWNSLGDGLAYEDFSFPIFLLEDENETNVIKQCYHDHNLSQNGSAPAFPLCAMQLFSHMHAVISTVTCMRRSFIQSSFSINPEIVCDPLSDYNVWSMLKPVNTSETLEPDDKVVVAATRLDSRSFFWNVAPGAESAVASFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMENGKFPVQLENIDSFVELGQVALRNSLELWMHTDPMSQKNETVQNQVEELLTTLEKSGAGVPTVVLRRLSRSQPLPPSSLQRFLRARNISGVVLADHSAVFHNHYYQSIYDTAENINVTYPEGQSPEEDLNFVTDAAKALAGVATVLGRALYQLAGGTNFSHTIQADPQTVTRLLYGFLVRANNSWFQSILRPDLRSYLGDGPLQHYIAVSSPTNTTYVVQYALANLTGKVIDLTREQCQDPSKVPTENKDLYEYTWVQGPLNSNETDRLPRCVRSTARLARALSPAFELKQWGSTEYSTWTESRWKDIRARIFLIASKELEFITLMVGFGVLVFSLVVTYCINAKADVLFIAPREPGSVSY*