Sequence details bmy_06312 (Coding sequence)

Part of scaffold_237 (Scaffold)

For more information consult the page for scaffold_237 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CASQ1 ENSTTRG00000001832 (Bottlenosed dolphin)

Gene Details

calsequestrin 1 (fast-twitch, skeletal muscle)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001724, Bottlenosed dolphin)

Protein Percentage 92.96%
cDNA percentage 94.14%
Ka/Ks Ratio 0.58883 (Ka = 0.017, Ks = 0.0289)

CASQ1 ENSBTAG00000020223 (Cow)

Gene Details

calsequestrin-1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000026932, Cow)

Protein Percentage 94.43%
cDNA percentage 93.16%
Ka/Ks Ratio 0.12152 (Ka = 0.028, Ks = 0.2302)

Additional orthologs identified in other species via the OPTIC pipeline.

CASQ1 (Human)   Casq1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1197 bp    Location:517956..528083   Strand:+
Raw sequence 
>bmy_06312
ATGAGTGCTGCAGACAGGATGGGGGCCAGAGCTGTGCCCGGCCTGCGGCTGGCACTGCTGTTACTGCTGGTGCTAGGGACACCCAAGTCAGGGGTGCAGGGGGAGGACGGGCTGGACTTCCCCGAGTATGATGGTGTGGACCGTGTGGTCAATGTCAACGCAAAGAACTACAAGAATGTGTTCAAGAAGTACGAGGTGCTGGCACTGCTCTACCACGAACACCCCGAGGACAACAAGGCCTCACAAAGACAGTTTGAGATGGAGGAGCTGATCCTGGAGTTAGCAGCCCAAGTCCTAGAAGACAAGGGTGTTGGCTTCGGGATGGTGGACTCTGAGAAGGACACGGTTGTAGCCAAGAAACTAGGACTAACTGAAGAGGACAGCATTTACGTATTCAAGGAAGATGAAGTCATTGAGTATGATGGCGAGTTTTCTGCTGACACCCTGGTGGAGTTTCTGCTTGATGTCCTAGAGGACCCTGTGGAATTTATTGAGGGTGAACGAGAGCTGCAGGCATTTGAGAATATCGAAGATGAGAACAAACTCATTGGCTACTTCAAGAGCAAAGACTCAGAGCATTACAAAGCCTACGAGGACGCAGCGGAGGAGTTTCATCCCTACATCCCCTTCTTCGCCACCTTCGACAGCAAGGTGGCAAAGAAGCTGACCCTGAAGCTGAACGAGATTGATTTCTACGAGGCCTTCATGGAAGAGCCTGTGACCATCCCGGATAAGCCCAATAGCGAAGAGGAGATTGTCAGCTTCGTGGAGGAGCACAGGAGATCAACCCTGAGGAAACTGAAGCCTGAGAGTATGTATGAGACCTGGGAGGACGATCTGGATGGAATCCATATTGTGGCCTTTGCAGAGGAAGATGATCCTGATGGCTATGAGTTCTTAGAGATTCTCAAGTCTGTGGCCCAAGATAACACTGAAAACCCTGACCTGAGCATCATCTGGATTGACCCTGATGACTTCCCCCTGCTGGTTCCATACTGGGAGAAGACGTTTAACATCGACCTGTCAGCCCCACAAATAGGAGTCGTCAATGTTACTGATGCGGACAGCATATGGATGGACATGGATGATGAAGAGGACCTGCCTTCTGCTGAGGAGCTGGAGGACTGGCTGGAGGATGTACTGGAGGGCGAGATCAACACAGAGGATGATGATGATGACGATGATGATGATGACTAG

Related Sequences

bmy_06312T0 Protein

Length: 399 aa      View alignments
>bmy_06312T0
MSAADRMGARAVPGLRLALLLLLVLGTPKSGVQGEDGLDFPEYDGVDRVVNVNAKNYKNVFKKYEVLALLYHEHPEDNKASQRQFEMEELILELAAQVLEDKGVGFGMVDSEKDTVVAKKLGLTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDVLEDPVEFIEGERELQAFENIEDENKLIGYFKSKDSEHYKAYEDAAEEFHPYIPFFATFDSKVAKKLTLKLNEIDFYEAFMEEPVTIPDKPNSEEEIVSFVEEHRRSTLRKLKPESMYETWEDDLDGIHIVAFAEEDDPDGYEFLEILKSVAQDNTENPDLSIIWIDPDDFPLLVPYWEKTFNIDLSAPQIGVVNVTDADSIWMDMDDEEDLPSAEELEDWLEDVLEGEINTEDDDDDDDDDD*