Part of scaffold_95 (Scaffold)

For more information consult the page for scaffold_95 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SHC1 ENSTTRG00000016176 (Bottlenosed dolphin)

Gene Details

SHC (Src homology 2 domain containing) transforming protein 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015333, Bottlenosed dolphin)

Protein Percentage 94.17%
cDNA percentage 94.64%
Ka/Ks Ratio 0.47706 (Ka = 0.0108, Ks = 0.0227)

SHC1 ENSBTAG00000019838 (Cow)

Gene Details

SHC-transforming protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000026432, Cow)

Protein Percentage 95.75%
cDNA percentage 95.16%
Ka/Ks Ratio 0.14731 (Ka = 0.0213, Ks = 0.1444)

SHC1  (Minke Whale)

Gene Details

SHC (Src homology 2 domain containing) transforming protein 1

External Links

Gene match (Identifier: BACU007464, Minke Whale)

Protein Percentage 99.82%
cDNA percentage 99.35%
Ka/Ks Ratio 0.03505 (Ka = 0.0008, Ks = 0.023)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1701 bp    Location:183179..176333   Strand:-
>bmy_03366
ATGGATCTCCTGCCCCCCAAGCCCAAGTACAACCCACTTCGGAATGAGTCTCTGTCATCGCTGGAGGAGGGAGCTTCAGGGTCCACCCCACCGGAGGAGCTGCCTTCCCCATCAGCCTCGTCTCTGGGGCCCATGCTGCCACCTCTGCCTGGGGACGATAGTCCCACTACCCTGTGCTCCTTCTTCCCCCGGATGAGCAACCTGAAGCTGGCCAACCCGGCTGGGGGGCGCCTGGGGCCGAAGGGGGAGCCAGGAAGGGCAGCCGAGGATGGGGAGGGGATCGTAGGGGCAGCCATGCCGGACTCAGGCCCCCTGCCCCTCCTCCAGGACATGAACAAGCTGAGTGGAGGCGGCGGGCGCAGGACTCGGGTGGAAGGGGGCCAGCTGGGGGGCGAGGAGTGGACCCGCCACGGGAGCTTTGTCAATAAGCCCACGCGGGGCTGGCTGCATCCCAACGACAAAGTCATGGGACCCGGGGTTTCCTACTTGGTTCGGTACATGGGCTGTGTGGAGGTCCTGCAGTCAATGCGCGCCCTGGACTTCAACACCCGGACTCAGGTCACCAGGGAGGCCATCAGTCTGGTGTGTGACGCTGTGCCGGGTGCTAAGGGGGCAACAAGGAGGAGAAAGCCCTGTAGCCGTCCACTCAGTTCCATCCTGGGGAGGAGTAACCTGAAATTTGCTGGAATGCCAATCACTCTCACCGTCTCCACCAGCAGCCTCAACCTCATGGCCGCAGACTGCAAACAGGACACAGCCGAGTATGTCGCCTATGTTGCCAAAGACCCGGTGAATCAGAGAGCCTGCCACATCCTGGAGTGTCCCGAAGGGCTTGCTCAGGACGTCATCAGCACCATTGGCCAGGCCTTCGAGTTGCGTTTCAAACAATACCTCAGGAACCCGCCCAAGCTGGTCACCCCCCATGACAGGATGGCTGGCTTTGATGGCTCAGCTTGGGATGAGGAGGAGGAAGAGCCACCTGACCATCAGTACTATAATGACTTCCCTGGGAAGGAACCCCCTCTTGGGGGGGTGGTGGACATGAGGCTTCGGGAAGGAGCCCCCCCGGGGGCTGCTCGACCCACTCCACCCAGTGCCCAGACCCCTAGCCACCTGGGAGCCACGCTGCCAGTGGGGCAGCCTGTTGGAGGAGACCCAGAAGCCCGCAAACAGATGCTGCCCCCGCCACCCTGCCCAGCAGGCCGAGAGCTCTTTGATGATCCCTCCTATGTCAACGTCCAGAACCTAGACAAGGCACGGCAAGCAGGCGGTGGGGCCGGGCCCCCCAATCCTGCCATCAATGGCAGCGCGCCCCGAGACCTCTTTGACATGAAGCCCTTTGAAGATGCCCTGCGGGTGCCTCCACCTCCCCAGTTGGTGGCCATGGCTGAGCAGCTCCGAGGGGAGCCCTGGTTTCACGGGAAGCTGAGCCGGCGGGAGGCCGAGGCACTGCTACAGCTCAACGGGGACTTCCTGGTGCGGGAAAGCACGACCACGCCTGGCCAGTACGTGCTCACTGGCCTGCAGAGTGGGCAGCCCAAGCACCTGCTACTGGTGGACCCTGAGGGTGTGGTTCGGACAAAGGATCACCGCTTTGAGAGTGTCAGTCACCTCATCAGCTACCACATGGACAATCACTTGCCCATCATCTCTGCGGGCAGCGAACTGTGTCTCCAGCAACCTGTGGAGCGGAAACTGTGA

Related Sequences

bmy_03366T0 Protein

Length: 567 aa      View alignments
>bmy_03366T0
MDLLPPKPKYNPLRNESLSSLEEGASGSTPPEELPSPSASSLGPMLPPLPGDDSPTTLCSFFPRMSNLKLANPAGGRLGPKGEPGRAAEDGEGIVGAAMPDSGPLPLLQDMNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCDAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGAPPGAARPTPPSAQTPSHLGATLPVGQPVGGDPEARKQMLPPPPCPAGRELFDDPSYVNVQNLDKARQAGGGAGPPNPAINGSAPRDLFDMKPFEDALRVPPPPQLVAMAEQLRGEPWFHGKLSRREAEALLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVERKL*