Sequence details bmy_03222 (Coding sequence)

Part of scaffold_92 (Scaffold)

For more information consult the page for scaffold_92 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SEMA5B ENSTTRG00000011757 (Bottlenosed dolphin)

Gene Details

sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011155, Bottlenosed dolphin)

Protein Percentage 87.06%
cDNA percentage 86.99%
Ka/Ks Ratio 0.11232 (Ka = 0.01, Ks = 0.0886)

SEMA5B ENSBTAG00000018765 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000024989, Cow)

Protein Percentage 95.07%
cDNA percentage 93.17%
Ka/Ks Ratio 0.09035 (Ka = 0.0266, Ks = 0.2939)

SEMA5B  (Minke Whale)

Gene Details

sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B

External Links

Gene match (Identifier: BACU006075, Minke Whale)

Protein Percentage 99.34%
cDNA percentage 98.9%
Ka/Ks Ratio 0.06627 (Ka = 0.0028, Ks = 0.0426)

Additional orthologs identified in other species via the OPTIC pipeline.

SEMA5B (Human)   Sema5b (Mouse)  

Genome Location

Sequence Coding sequence

Length: 2739 bp    Location:1605606..1646767   Strand:+
Raw sequence 
>bmy_03222
ATGGTGTTCCCGGGACCCCTGGCTATCACCCTGCTGCCGCCCAGCCTCACACTGCTGGTGGTGCGCCTCGCCAGCTCCCAGGATGTCGCCAGTGAACCCAGCAGTGAGCAGCAGCTGTGCTCCCTGAGGGAGCACCCCATCGTGGCCTTTGCAGATCTGAAGCCATGGGTCTCTAACTTCACCTACCCTGGAGCCCAAGATTTCTCCCAGCTTGCTCTGGATCCTTCCAGAAACCAGCTCATCGTGGGAGCCAGGAACTACCTCTTCAGACTCAGCCTTGCCAATGTCTCCCTCCTTCAGGCCACAGAGTGGGCCTCCAACGAGGGCACGCGCCGCTCCTGCCAAAGCAAAGGGAAGACCGAGGAGGAGTGTCAGAACTACGTGCGAGTCCTGATTGTCACTGGCCGGAAAGTGTTCATGTGTGGGACCAATGCCTTCTCCCCAGTGTGCTCCAGCAGACAGGTGGGGAACCTCAGCCGGACCGTGGAGAAGATCAACGGTGTGGCCCGCTGCCCCTACGACCCGCGTCACAACTCCACAGCTGTCATCTCATCCCAGGGGGAGCTCTACGCAGCCACGGTCATCGACTTCTCAGGTCGGGACCCTGCCATCTACCGCAGCCTGGGCAGCAGGCCACCGCTTCGTACCGCCCAGTATAACTCCAAGTGGCTCAATGAGCCAAACTTTGTAGCAGCCTATGATATCGGGCTGTTCGCGTACTTCTTGCTGCGGGAGAACGCGGTGGAGCATGACTGTGGGCGCACCGTGTACTCTCGGGTGGCCCGCGTGTGCAAGAACGACATCGGGGGCCGGTTCCTGCTGGAGGACACTTGGACCACGTTCATGAAGGCCCGGCTCAACTGCTCCCGCCCGGGCGAGGTCCCCTTCTACTACAACGAGCTGCAGAGTGCCTTCCACCTGCCGGAGCAGGACCTCATCTACGGGGTCTTCACCACCAATGTAAACAGCATTGCCGCATCTGCTGTCTGCGCCTTCAACCTCAGTGCCATCTCTCAGGCTTTCAATGGCCCGTTTCGCTACCAGGAGAACCCCAGGGCTGCCTGGCTCCCCATCGCCAACCCCATCCCCAATTTCCAGGCGCTGTCCACGACGAGCCGCAGCCTCCGCGGCTGCTACCTGGAGGAGCTGCACGTGCTGCCCCCTGGGCGCCGGGAGCCGCTGCGCAGCCTGCGCATCCTGCACAGCGCCCGCGCGCTCTTCGTGGGGTTGAGCGACGGCGTGCTGCGGGTGCCGCTGGAGAGGTGCGCCGCCTACCGCAGCCAGGGGGCATGCCTGGGGGCACGGGACCCGTACTGCGGCTGGGACGGGAAGCAGCAACGTTGCAGCACGCTCGAGGACAGCTCCAACATGAGCCTCTGGACCCAGAACATCACAGCATGTCCTGTGCGAAATGTGACTCGGGATGGGGGCTTCGGCCCATGGTCACCATGGCAACCGTGTGAGCACTTAGATGGGGACAACTCAGGTTCTTGCCTGTGTCGGGCCCGGGCCTGTGACTCCCCCCGACCCCGCTGTGGGGGCTGTGACTGCCTGGGGCCAGCCATCCACGTTGCCAACTGCTCCAGGTTCTGTAACGAAAACACGCCTTGCCCGGTGCCCATCTTCTGGGCATCCTGGGGCTCCTGGAGCAAGTGCAGCAGCCACTGTGGGAGCGGTGTGCAATCGCGGCGTCGGGCCTGTGAGAACGGCAACTCCTGCCCGGGCTGCGGCGTGGAGTTCAAGACTTGCAACCCTGAAGGCTGCCCCGAAGTGCGGCGCAACACGCCGTGGACGCCCTGGCTACCGGTGAACGTGACCCAGGGAGGGGCGCGGCAGGAGCAGCGCTTCCGCTTCACGTGCCGCGCGCCGCTGGCCGACCCCCACGGGCTGCAGTTTGGCCGGAGGAGGACGGAGACCCGAACCTGCCCCGCGGACGGCTCTGGAGCCTGCGACACGGACGCCTTGGTGGAGGAGCTCCTGCGCAGCGGGGGCAGCTCCCCGCACACGGCGAGCGGGGGCTGGGCCGCCTGGGGCCCGTGGTCCTCCTGCTCCCGGGACTGTGAGCTGGGCTTCCGCGTCCGCAAGAGAACGTGCACGAACCCGGAGCCCCGCAACGGCGGCCTGCCGTGCGTGGGTGACGCTGCCGAGTACCAGGACTGCAACCCCCAAGCTTGTCCAGAAGGCTGGTCGCCGTGGTCTGAGTGGAGTGCATGCACGGAGGATGGAGTCCAAAGCCGTGGCCGGCACTGTGAGGAGCTGGTCCCCGGGCCCAGCACTTGTGCTGGAAACAGCAGCCAGAGCCGCCCCTGCCCCTACAGGGAGATTCCCGTGATCCTGCCTGCCTCCAGTGTGGACGAGGCCACTGGCTGTGGAGGATTCAGTCTCATCCACCTGGTGGCCACAGGCATCTCCTGCTTCCTGGGCTCTGGGCTGCTGACCTTGGCGGTGTACCTGTCCTGCCAGCACTGCCGGCATCAGTCCCAGGAGTCCACGCTCGTCCATCCCGCCACCCCCAACCACCTGCATTACAAGGGTGGGGGTGCCCCCAAGAATGAGAAGTACACACCCATGGAATTCAAGACCCTGAATAAGAATAACCTGATCCCCGATGACAGAGCCAACTTCTACCCATTGCAGCAGACCAATGTGTACACAACCACCTACTACCCGAGTCCACTGAACAAACACAGCTTCCGGCCTGAGGCCTCACCTGGACAACGGTGCTTCCCCAACAGCTGA

Related Sequences

bmy_03222T0 Protein

Length: 913 aa      View alignments
>bmy_03222T0
MVFPGPLAITLLPPSLTLLVVRLASSQDVASEPSSEQQLCSLREHPIVAFADLKPWVSNFTYPGAQDFSQLALDPSRNQLIVGARNYLFRLSLANVSLLQATEWASNEGTRRSCQSKGKTEEECQNYVRVLIVTGRKVFMCGTNAFSPVCSSRQVGNLSRTVEKINGVARCPYDPRHNSTAVISSQGELYAATVIDFSGRDPAIYRSLGSRPPLRTAQYNSKWLNEPNFVAAYDIGLFAYFLLRENAVEHDCGRTVYSRVARVCKNDIGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSAFHLPEQDLIYGVFTTNVNSIAASAVCAFNLSAISQAFNGPFRYQENPRAAWLPIANPIPNFQALSTTSRSLRGCYLEELHVLPPGRREPLRSLRILHSARALFVGLSDGVLRVPLERCAAYRSQGACLGARDPYCGWDGKQQRCSTLEDSSNMSLWTQNITACPVRNVTRDGGFGPWSPWQPCEHLDGDNSGSCLCRARACDSPRPRCGGCDCLGPAIHVANCSRFCNENTPCPVPIFWASWGSWSKCSSHCGSGVQSRRRACENGNSCPGCGVEFKTCNPEGCPEVRRNTPWTPWLPVNVTQGGARQEQRFRFTCRAPLADPHGLQFGRRRTETRTCPADGSGACDTDALVEELLRSGGSSPHTASGGWAAWGPWSSCSRDCELGFRVRKRTCTNPEPRNGGLPCVGDAAEYQDCNPQACPEGWSPWSEWSACTEDGVQSRGRHCEELVPGPSTCAGNSSQSRPCPYREIPVILPASSVDEATGCGGFSLIHLVATGISCFLGSGLLTLAVYLSCQHCRHQSQESTLVHPATPNHLHYKGGGAPKNEKYTPMEFKTLNKNNLIPDDRANFYPLQQTNVYTTTYYPSPLNKHSFRPEASPGQRCFPNS*